From: LRScaf: improving draft genomes using long noisy reads
Species | Type | Total bases (bp) | Coverage | Median (bp) | Longest (bp) | Source |
---|---|---|---|---|---|---|
E. coli | Illumina | 350,000,031 | 70.0 X | 100 | 100 | ERA000206 |
Illumina a | 256,927,500 | 54.9 X | 300 | 300 | SRR826442; SRR826444; SRR826446; SRR826450 | |
PacBio | 93,994,356 | 20.1 X | 8712 | 41,331 | SRX669475; SRX533603 | |
Nanopore (2D) a | 136,895,083 | 29.2 X | 6153 | 43,600 | ||
Nanopore (Full) b | 21,972,483 | 4.7 X | 5743 | 47,422 | ERX708228 | |
Nanopore (All) b | 158,867,566 | 34.0 X | 6086 | 47,422 | ERX708228 | |
Nanopore (Raw) b | 311,558,723 | 66.5 X | 3557 | 94,116 | ERX708228 | |
S. cerevisiae | Illumina | 1,268,786,706 | 105.1 X | 202 | 202 | SRR527545; SRR527546 |
PacBio | 249,319,042 | 20.7 X | 4554 | 27,575 | SRX533604 | |
Nanopore (Nanocorr) b | 526,588,732 | 43.6 X | 5512 | 72,879 | SRP055987 | |
Nanopore (Raw) b | 2,392,848,698 | 198.2 X | 5059 | 191,145 | SRP055987 | |
A. thaliana (KBS-Mac-74) | Illumina | 8,420,975,500 | 70.3 X | 250 | 250 | ERR2173372 |
Nanopore | 3,421,779,258 | 28.6 X | 7543 | 269,087 | ERR2173373 | |
A. thaliana (ler-0) | Illumina a | 6,919,422,000 | 59.0 X | 300 | 300 | |
PacBio a | 2,400,246,920 | 20.5 X | 15,357 | 41,753 | ||
O. sativa | Illumina | 43,519,132,800 | 111.5 X | 150 | 150 | PRJNA515358 c |
PacBio | 7,999,992,602 | 20.5 X | 4117 | 50,493 | PRJNA318714 | |
S. pennellii | Illumina | 39,007,839,296 | 42.6 X | 311 | 311 | PRJEB19787 |
Nanopore | 27,483,806,911 | 30.0 X | 13,061 | 15,387 | PRJEB19787 | |
Z. mays | PacBio | 49,999,992,839 | 23.7 X | 1347 | 17,784 | PRJNA10769 |
H. sapiens (CHM1) | PacBio | 59,999,995,767 | 20.0 X | 1569 | 208,628 | SAMN02744161 |
H. sapiens (NA12878) | Nanopore | 114,380,310,980 | 35.0 X | 4569 | 1,537,349 | PRJEB23027 |