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Table 1 Characteristics of eight RNA-Seq libraries used for transcriptome analysis

From: Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight

Library

# Fragments

Water uptake (ml/30s)

RIN

Total

Mapped

Unmapped

Mapped/Total (%)

HC

147,805,559

140,545,448

7,260,111

95.1

> 15

8.0

IM33R

129,158,036

107,984,108

21,173,928

83.6

0

3.4

DG49R

135,076,469

98,028,045

37,048,424

72.6

0

4.1

PC24R

134,734,532

127,706,788

7,027,744

94.8

10

3.5

PC26R

136,760,943

112,230,256

24,530,687

82.1

4

4.4

DG43S

133,565,526

56,889,420

76,676,106

42.6

0

1.0

DG50R

138,068,924

76,809,852

61,259,072

55.6

0

1.0

IM39R

131,665,044

63,225,754

68,439,290

48.0

0

2.2

  1. HC healthy control; The rest of libraries were affected by citrus blight. Sequence reads were trimmed to remove low quality bases at the ends of reads