Table 3 Differentially regulated transcripts in seven libraries of tree roots affected by citrus blight
From: Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight
Gene_symbol | Citrus sinensis_ID | Description | Ave. FC (log2) |
|---|---|---|---|
Carbohydrate metabolism and Cell Wall | |||
 TPS11 | cs4g02730 | Encodes an enzyme putatively involved in trehalose biosynthesis | 3.9 |
 GSL12 | orange1.1 t02029 | glucan synthase-like 12,similar to callose synthase | −3.0 |
 CSLB04 | cs1g03980 | cellulose synthase-like B4 | −3.0 |
 CESA6/CESA9 | cs1g04570 | cellulose synthase, related to CESA6/cellulose synthase A9 | −2.5 |
 CSLB06 | cs2g21100 | cellulose synthase-like B6 | −4.2 |
 CESA6I | cs3g21530 | a cellulose synthase isomer. CESA6 | −3.9 |
 CESA3I | cs7g01740 | a cellulose synthase isomer. CESA3 | −3.0 |
 PRP4 | cs8g09090 | Encodes one of four proline-rich proteins | 4.3 |
 XTR4 | cs3g08950 | xyloglucan endotransglycosylase-related protein 4 | 3.0 |
 ConA-like | cs8g12370 | Concanavalin A-like lectin protein kinase | 4.5 |
 PAE | orange1.1 t03602 | Pectinacetylesterase family protein | 4.4 |
 AAE12 | cs6g15880 | acyl activating enzyme 12 | 3.4 |
 AMP-dependent | cs9g17340 | AMP-dependent synthetase and ligase family protein | 3.3 |
 E3.RING | cs2g10580 | Zinc finger (C3HC4-type RING finger) family protein | 4.4 |
 NA | cs9g06040 | Eukaryotic aspartyl protease family protein | 3.9 |
 AATP1 | cs6g20470 | AAA-ATPase 1 | 4.1 |
Secondary Metabolism | |||
 CAD | cs1g20580 | NAD-dependent mannitol dehydrogenase | 6.1 |
 COMT | orange1.1 t05018 | Caffeic acid 3-O-methyltransferase | −4.1 |
 OMT1 | cs5g16860 | A caffeic acid/5-hydroxyferulic acid O-methyltransferase | 6.7 |
 AAE12 | cs6g15880 | acyl activating enzyme 12 | 3.4 |
 UGT74E2 | cs2g18290 | Encodes a UDP-glucosyltransferase | 3.5 |
 CYP79A2 | cs7g29740 | Encodes cytochrome P450 79A2 | 4.3 |
 CYP79A2 | cs7g29760 | Encodes cytochrome P450 | 5.0 |
 CYP79A1 | cs7g29750 | Cytochrome P450 79A1 | 4.7 |
Transport | |||
 PDR3 | cs8g20130 | pleiotropic drug resistance 3 | 2.5 |
 AMT2 | cs6g08950 | ammonium transporter 2 | 3.6 |
 AMT1;1 | orange1.1 t03479 | ammonium transporter 1;1 | 3.2 |
 PHT3;1 | cs7g19830 | phosphate transporter 3;1 | 3.7 |
 PIP1.1 | cs6g07970 | Aquaporin PIP1.1 | −2.9 |
 PIP1 | cs7g31410 | a member of the plasma membrane intrinsic protein subfamily PIP1 | −4.0 |
 PIP3 | cs8g02530 | a member of the plasma membrane intrinsic protein PIP3 | −3.6 |
 PIP2.2 | cs8g16640 | Probable aquaporin PIP2.2 | −5.2 |
 TIP | cs1g15440 | Delta tonoplast intrinsic protein | −5.6 |
 TIP | orange1.1 t03005 | Encodes a tonoplast intrinsic protein, functions as water channel | −4.0 |
 EXO70 | cs6g05440 | A member of EXO70 gene family, involved in cell vesicle transport | 3.6 |
 MRP-like ABC | cs7g10200 | an ATP-dependent MRP-like ABC transporter | 3.4 |
 NA | cs1g01440 | Major facilitator superfamily protein | 2.4 |
 NA | cs3g27810 | Auxin efflux carrier family protein | 3.8 |
 NA | cs9g06620 | Encodes a protein with hexose-specific/H+ symporter activity | 4.0 |
 NA | cs1g01440 | Major facilitator superfamily protein | 2.4 |
Hormone and Plant Defense Responses | |||
 LRR repeat | cs5g11310 | Leucine-rich repeat protein in brassinosteroid signal transduction | 4.6 |
 2OG-Fe (II) | cs7g12100 | 2-oxoglutarate (2OG) and Fe (II)-dependent oxygenase | 4.2 |
 ACCO1 | cs2g20590 | 1-aminocyclopropane-1-carboxylate oxidase 1 | 5.4 |
 UGT74E2 | cs2g18290 | Encodes a UDP-glucosyltransferase | 3.5 |
 ChiA | cs8g01840 | Endochitinase A precursor | −7.9 |
 DOX | cs2g28680 | Encodes an alpha-dioxygenase | 5.1 |
 RbohD | cs8g12000 | NADPH/respiratory burst oxidase protein D | 4.0 |
 Kunitz | cs5g13890 | Kunitz family trypsin and protease inhibitor protein | −10.9 |
 B120 | cs2g07100 | protein serine/threonine kinase activity | 3.6 |
 CDRK1 | cs6g17020 | CDPK-related kinase 1 | −3.3 |
 calcineurin B-like | cs1g18400 | Encodes a member of the calcineurin B-like calcium sensor gene | −2.8 |
 MuDR | orange1.1 t00859 | MuDR family transposase | 3.1 |
 TNT 1–94 | cs2g17600 | Retrovirus-related Pol polyprotein from transposon TNT 1–94 | −3.5 |
 TNT 1–94 | cs1g01170 | Retrovirus-related Pol polyprotein from transposon TNT 1–94 | 2.7 |
 TNT 1–94 | cs3g09730 | Retrovirus-related Pol polyprotein from transposon TNT 1–94 | −2.8 |
 WAK | cs1g13910 | Encodes a receptor-like kinase | 3.3 |
 ATPase E1-E2 | cs5g30640 | ATPase E1-E2 type/haloacid dehalogenase-like hydrolase protein | 3.7 |
 PIK | cs6g19820 | Phosphoinositide kinase | −3.6 |
 PXY | cs9g14980 | Phloem intercalated with xylem | −3.8 |
 LRR protein | cs9g14860 | Leucine-rich repeat receptor-like protein kinase family protein | 4.2 |
 NA | orange1.1 t00778 | S-adenosyl-L-methionine-dependent methyltransferases | 4.2 |
 NA | cs8g02010 | Transmembrane amino acid transporter family protein | 3.7 |
Not Assigned | |||
 PLAC8 | cs2g17160 | Protein of unknown function Cys-rich | 4.2 |
 NA | orange1.1 t02977 | HXXXD-type acyl-transferase family protein | 3.7 |
 NA | orange1.1 t02980 | HXXXD-type acyl-transferase family protei | 3.9 |
 NA | cs1g19935 | not assigned.unknown | 3.2 |
 NA | cs3g04670 | not assigned.unknown | 4.2 |
 NA | cs3g16240 | not assigned.unknown | 4.3 |
 NA | cs3g21660 | not assigned.unknown | 5.2 |
 NA | cs4g18120 | not assigned.unknown | 3.4 |
 NA | cs6g11300 | not assigned.unknown | 4.3 |
 NA | cs6g15820 | not assigned.unknown | 4.0 |
 NA | orange1.1 t03318 | not assigned.unknown | 4.6 |
 NA | orange1.1 t03320 | not assigned.unknown | 3.9 |