Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight

BMC Genomics

Table 4 Distribution of fragments of mapped reads to the citrus and other genomes

Library	Total	All Plant Virus	CBaPRV	Citrus genome	Mitochondria	Pseudomonas	Unmapped
HEALTHY	148,237,895	16,209	13,408	94,130,532	10,326,229	3887	43,447,630
IM33R	136,912,322	1,038,343	61,593	71,680,596	16,322,008	1,092,160	46,717,622
DG49R	140,225,261	1,902,459	18,633	82,661,128	19,205,633	46,467	36,390,941
PC24R	137,259,789	1,303,002	14,017	90,557,581	12,524,404	104,470	32,756,315
PC26R	141,882,978	490,461	65,743	80,535,945	10,820,785	891,220	49,078,824
DG43S^a	137,256,704	264,600	111,012	56,240,983	20,178,634	5343	26,000,498
DG50R	138,399,721	49,072	147,522	93,983,664	13,060,335	587,965	30,571,163
IM39R	137,256,704	574,979	103,402	75,571,692	17,757,232	1,334,509	41,914,890

^a One of four technical replicates in library DG43S had a corrupt read that caused that replicate to not map properly. Therefore, only three of four technical replicates, or 75% of the total reads were mapped for DG43S

ISSN: 1471-2164