From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco
Feature | STAR + StringTie (with reference) | STAR + Scallop | HISAT + StringTie | |||
---|---|---|---|---|---|---|
Sensitivity (%) | Precision (%) | Sensitivity (%) | Precision (%) | Sensitivity (%) | Precision (%) | |
Base | 97.3 | 99.8 | 87.7 | 85.2 | 80.0 | 93.8 |
Exon | 97.3 | 98.4 | 57.0 | 75.2 | 63.9 | 89.9 |
Intron | 96.8 | 99.3 | 70.7 | 99.1 | 85.7 | 97.8 |
Intron Chain | 93.6 | 84 | 31.9 | 56.7 | 25.7 | 38.9 |
Transcript | 94.1 | 85.7 | 33.9 | 35.2 | 28.4 | 43.8 |
Locus | 98.3 | 99.4 | 71.9 | 57.7 | 69.1 | 82.0 |