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Table 3 Accuracy of assembled transcripts for simulated data from single node runs

From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

Feature

STAR + StringTie (with reference)

STAR + Scallop

HISAT + StringTie

 

Sensitivity (%)

Precision (%)

Sensitivity (%)

Precision (%)

Sensitivity (%)

Precision (%)

Base

97.3

99.8

87.7

85.2

80.0

93.8

Exon

97.3

98.4

57.0

75.2

63.9

89.9

Intron

96.8

99.3

70.7

99.1

85.7

97.8

Intron Chain

93.6

84

31.9

56.7

25.7

38.9

Transcript

94.1

85.7

33.9

35.2

28.4

43.8

Locus

98.3

99.4

71.9

57.7

69.1

82.0