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Table 6 Precision of assembled transcripts for mouse embryonic stem cell single cell dataset across different transcript assembly approaches

From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

FeatureSTAR + StringTie (with reference)STAR + ScallopHISAT + StringTie
 Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)
Base52.890.355.056.234.538.451.188.051.0
Exon69.895.978.374.671.773.169.195.376.2
Intron77.096.988.080.987.185.676.096.486.3
Intron Chain57.093.476.162.973.070.556.492.373.1
Transcript48.190.958.854.847.850.848.590.256.2
Locus40.486.141.746.330.133.940.185.839.5