Table 7 Runtime comparison for transcript assembly of single cell dataset with and without the Falco framework
From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco
System | Nodes | Human - brain (hours) | ||
|---|---|---|---|---|
STAR + StringTie (with reference) | STAR + Scallop | HISAT + StringTie | ||
Standalone | 1 (1 process) | 17.2 | 16.2 | 16.3 |
1 (12 processes) | 4.2 | 5.5 | 5.7 | |
1 (16 processes) | N/A | N/A | 4.1 | |
Falco | 10 node | 2.9 | 2.8 | 2.3 |
20 node | 1.7 | 1.7 | 1.4 | |
30 node | 1.3 | 1.3 | 1.1 | |
40 node | 1.1 | 1.1 | 0.9 | |