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Table 1 Studies that have classified gene regulatory divergence in genomes

From: Evolution of cis- and trans-regulatory divergence in the chicken genome between two contrasting breeds analyzed using three tissue types at one-day-old

SpeciesTissueSexCisTransCis and transConserved and ambiguousMethodCitation
DrosophilaWhole flyFemale12.4%30%35%22.6%Hierarchical statistical analysesMcManus et al., 2010
MouseLiverMale14%0.6%17.4%68%Maximum likelihood based approachGoncalves et al., 2012
MouseTestisMale24%9%44%23%Hierarchical statistical analysesCrowley et al., 2015
CoffeaaLeaf 15.5%18.5%17.5%48.0%Hierarchical statistical analysesCombes et al., 2015
14.5%18.3%16.6%50.6%
ChickenbBrainFemale3.45%3.70%4.88%87.99%Hierarchical statistical analysesThis article
Male3.75%4.86%4.37%87.01%
LiverFemale7.41%12.92%16.15%63.53%
Male8.31%13.93%17.07%60.70%
MuscleFemale5.60%15.80%10.79%67.82%
Male4.72%16.73%11.58%66.99%
  1. aThis article contains two crosses (cross C × E and cross E × C)
  2. bThis study contains two crosses (cross 2 and cross 3), and we took the cross 2 as an example
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