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Table 1 Characteristics of 48 newly developed InDel markers

From: Characterization of genome-wide genetic variations between two varieties of tea plant (Camellia sinensis) and development of InDel markers for genetic research

Marker IDScaffold locationFragment size (bp)NaMAFHoHePIC
CsInDel01Scaffold 5: 236696139–15630.7870.3830.3610.327
CsInDel02Scaffold 5: 1208833186–20540.4891.0000.6330.555
CsInDel03Scaffold 12: 195263332–35430.5000.4890.5770.478
CsInDel04Scaffold 30: 3820588214–24250.5320.5320.6360.576
CsInDel05Scaffold 39: 128636236–26440.4790.9790.5560.448
CsInDel06Scaffold 41: 2074123280–29530.8080.1800.3190.273
CsInDel07Scaffold 46: 249178176–18930.7340.3620.4050.336
CsInDel08Scaffold 51: 314982206–21560.3940.6380.6910.627
CsInDel09Scaffold 51: 760768201–24870.5320.6600.6790.645
CsInDel10Scaffold 52: 469482288–30630.7450.2550.3940.329
CsInDel11Scaffold 60: 843530292–33260.3830.2130.7480.701
CsInDel12Scaffold 60: 843632240–27550.4260.6600.7040.645
CsInDel13Scaffold 64: 151635270–28930.4040.6170.6430.559
CsInDel14Scaffold 66: 500052203–23240.4360.0640.6210.535
CsInDel15Scaffold 77: 505984185–20720.5001.0000.5050.375
CsInDel16Scaffold 89: 1202911231–24820.8190.1490.3000.252
CsInDel17Scaffold 98: 664107306–35460.3950.2560.7310.677
CsInDel18Scaffold 114: 416691283–32660.4890.8090.7030.661
CsInDel19Scaffold 129: 540746180–21460.4221.0000.6520.579
CsInDel20Scaffold 154: 767901285–29750.2660.9790.7630.709
CsInDel21Scaffold 225: 80286191–20420.6490.3620.4610.352
CsInDel22Scaffold 1000: 52494216–28830.5320.4040.6120.537
CsInDel23Scaffold 1001: 123324236–32660.6280.4890.5680.526
CsInDel24Scaffold 1001: 149678190–19920.7980.0210.3260.271
CsInDel25Scaffold 1001: 155681195–21820.6490.3190.4610.352
CsInDel26Scaffold 1001: 1251845341–36330.5830.8330.5110.399
CsInDel27Scaffold 1001: 1261469273–29030.7770.0640.3590.306
CsInDel28Scaffold 1001: 1400899213–25360.6600.3830.5370.501
CsInDel29Scaffold 1001: 1491192182–22640.4571.0000.5860.489
CsInDel30Scaffold 1001: 1691928238–25840.7450.3620.4110.363
CsInDel31Scaffold 1001: 1982826284–31640.4890.9150.6190.539
CsInDel32Scaffold 1452: 285463272–29930.5960.4260.5110.406
CsInDel33Scaffold 1539: 196438271–28020.7980.4040.3260.271
CsInDel34Scaffold 1541: 138532265–28630.5640.8510.5230.413
CsInDel35Scaffold 1543: 253456172–20720.9150.1280.1570.144
CsInDel36Scaffold 1551: 196819157–23730.6060.7450.4990.391
CsInDel37Scaffold 1553: 529121211–23740.5640.5110.5470.451
CsInDel38Scaffold 1555: 5209109–340140.2980.4890.8690.849
CsInDel39Scaffold 1579: 1466247261–27220.6060.7870.4830.363
CsInDel40Scaffold 1592: 672899276–32970.5960.9790.6660.489
CsInDel41Scaffold 1593: 1022219172–18720.9570.0850.0820.078
CsInDel42Scaffold 1594: 195199184–20630.6910.4260.4540.380
CsInDel43Scaffold 1611: 1270988226–25450.4260.3190.6840.619
CsInDel44Scaffold 2220: 166816292–32830.5430.5750.5210.402
CsInDel45Scaffold 15,285: 211487281–32150.3330.9520.7520.699
CsInDel46Scaffold 15,433: 302840190–25320.6380.4680.4670.355
CsInDel47Scaffold 15,579: 267174176–18620.9570.0430.0820.078
CsInDel48Scaffold 15,650: 137667228–26660.4890.5960.6710.614
Average4.020.5850.5240.5280.457
  1. Na number of alleles, MAF major allele frequency, Ho observed heterozygosity, He expected heterozygosity, PIC polymorphism information content