Table 2 Statistics on SNPs and InDels within catechin biosynthesis-related genes
Gene name | Gene ID | SNP | InDel | Gene name | Gene ID | SNP | InDel | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
DNA | CDs | DNA | CDs | DNA | CDs | DNA | CDs | ||||
PAL | TEA014056.1 | 2 | 2 | 0 | 0 | F3H | TEA004906.1 | 0 | 0 | 1 | 0 |
TEA034008.1 | 6 | 6 | 0 | 0 | TEA010326.1 | 1 | 1 | 0 | 0 | ||
TEA003137.1 | 16 | 16 | 0 | 0 | TEA032907.1 | 3 | 3 | 1 | 1 | ||
TEA023243.1 | 3 | 3 | 0 | 0 | TEA028622.1 | 75 | 1 | 3 | 0 | ||
TEA024587.1 | 3 | 3 | 0 | 0 | TEA009737.1 | 4 | 4 | 0 | 0 | ||
TEA003374.1 | 2 | 2 | 1 | 0 | TEA000753.1 | 1 | 1 | 0 | 0 | ||
C4H | TEA034001.1 | 16 | 8 | 1 | 1 | TEA023937.1 | 1 | 1 | 0 | 0 | |
TEA016772.1 | 5 | 1 | 1 | 0 | TEA016601.1 | 4 | 2 | 1 | 0 | ||
TEA034002.1 | 6 | 6 | 0 | 0 | TEA023790.1 | 10 | 3 | 1 | 0 | ||
4CL | TEA018887.1 | 1 | 1 | 0 | 0 | TEA000474.1 | 8 | 1 | 0 | 0 | |
TEA034012.1 | 9 | 4 | 1 | 1 | TEA026443.1 | 1 | 1 | 0 | 0 | ||
TEA019275.1 | 14 | 10 | 0 | 0 | TEA004898.1 | 1 | 1 | 0 | 0 | ||
TEA027829.1 | 12 | 3 | 1 | 0 | TEA006643.1 | 15 | 15 | 0 | 0 | ||
TEA025906.1 | 2 | 1 | 0 | 0 | TEA014951.1 | 29 | 8 | 2 | 0 | ||
TEA009431.1 | 42 | 10 | 4 | 2 | DFR | TEA032730.1 | 2 | 0 | 1 | 0 | |
TEA018045.1 | 22 | 3 | 4 | 0 | TEA023829.1 | 13 | 1 | 0 | 0 | ||
TEA006577.1 | 6 | 1 | 0 | 0 | TEA021807.1 | 2 | 0 | 0 | 0 | ||
TEA031627.1 | 11 | 8 | 0 | 0 | TEA021815.1 | 2 | 2 | 0 | 0 | ||
TEA022274.1 | 2 | 1 | 0 | 0 | ANS | TEA010322.1 | 1 | 1 | 0 | 0 | |
TEA010681.1 | 8 | 4 | 0 | 0 | TEA015762.1 | 1 | 1 | 0 | 0 | ||
TEA002100.1 | 13 | 0 | 1 | 0 | TEA015769.1 | 1 | 0 | 0 | 0 | ||
CHS | TEA018665.1 | 1 | 1 | 0 | 0 | ANR | TEA030023.1 | 1 | 1 | 0 | 0 |
TEA034046.1 | 34 | 10 | 0 | 0 | TEA022960.1 | 6 | 2 | 0 | 0 | ||
TEA034011.1 | 6 | 4 | 0 | 0 | TEA007646.1 | 1 | 0 | 1 | 0 | ||
TEA034045.1 | 1 | 1 | 0 | 0 | TEA003247.1 | 1 | 1 | 0 | 0 | ||
TEA023331.1 | 2 | 2 | 0 | 0 | LAR | TEA021535.1 | 1 | 1 | 0 | 0 | |
TEA023340.1 | 3 | 3 | 2 | 0 | TEA027582.1 | 0 | 0 | 2 | 0 | ||
TEA034013.1 | 2 | 2 | 0 | 0 | TEA009266.1 | 3 | 3 | 1 | 0 | ||
TEA034043.1 | 31 | 7 | 0 | 0 | SCPLA1 | TEA034031.1 | 4 | 2 | 0 | 0 | |
TEA034019.1 | 3 | 3 | 0 | 0 | TEA034032.1 | 11 | 5 | 0 | 0 | ||
TEA034014.1 | 1 | 1 | 0 | 0 | TEA010715.1 | 6 | 5 | 0 | 0 | ||
TEA011908.1 | 6 | 1 | 0 | 0 | TEA034056.1 | 33 | 1 | 0 | 0 | ||
TEA019029.1 | 4 | 4 | 0 | 0 | TEA009664.1 | 4 | 0 | 0 | 0 | ||
CHI | TEA034003.1 | 10 | 2 | 1 | 0 | TEA016469.1 | 2 | 0 | 0 | 0 | |
TEA033023.1 | 127 | 4 | 10 | 0 | TEA016463.1 | 9 | 1 | 0 | 0 | ||
TEA033031.1 | 2 | 1 | 0 | 0 | TEA034055.1 | 59 | 1 | 0 | 0 | ||
F3’H | TEA016718.1 | 2 | 2 | 0 | 0 | TEA034034.1 | 4 | 0 | 0 | 0 | |
TEA010133.1 | 5 | 2 | 0 | 0 | TEA034036.1 | 1 | 1 | 0 | 0 | ||
TEA006847.1 | 14 | 10 | 1 | 1 | TEA023444.1 | 3 | 0 | 0 | 0 | ||
F3’5’H | TEA013315.1 | 12 | 12 | 0 | 0 | TEA034039.1 | 31 | 2 | 0 | 0 | |
TEA034021.1 | 6 | 1 | 0 | 0 | TEA023451.1 | 4 | 1 | 0 | 0 | ||
TEA034051.1 | 32 | 4 | 4 | 0 | TEA000223.1 | 4 | 0 | 0 | 0 | ||