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Table 2 Differentiation trajectories clustering†

From: Molecular evolution and expression of opsin genes in Hydra vulgaris

Opsin

Juliano aepLRv2 ID

Cluster

HvOpA1

t29274aep

i_nb2, i_nb3, i_nb4, i_nb5, ecEp_bd, i_nem

HvOpB1

t21413aep

i_smgc1, i_smgc2, i_gmgc, i_n_en2

HvOpC1

t26793aep

i_n_ec1, i_n_ec3, i_n_ec4

HvOpC2

t24044aep

i_n_ec1, ecEp_nem

HvOpC3

t10575aep

i_n_ec1, i_n_ec3, i_n_ec5

HvOpC4

no match*

 

HvOpC5

t24564aep

i_n_ec1, i_n_ec4

HvOpD1

t36346aep

i_n_ec1, i_n_ec3, i_n_en1, i_n_en2

HvOpD2

no match

 

HvOpD3

no match

 

HvOpD4

t37969aep

i_n_ec1, i_n_ec3, i_en1, i_n_en2

HvOpD5

t29512aep

i_n_ec1, i_n_ec3, i_nc_prog

HvOpD6

no match

 

HvOpD7

no match

 

HvOpD8

t36136aep

i_n_ec1, i_n_ec3

HvOpD9

no match

 

HvOpD10

no match

 

HvOpD11

no match

 

HvOpD12

no match

 

HvOpD13

no match

 

HvOpD14

t33805aep

i_n_ec1, i_n_ec3, i_n_ec4

HvOpD15

no match

 

HvOpD16

no match

 

HvOpD17

t27882aep

i_gmgc, i_n_ec3, i_n_en3, i_nc_gc_prog, i_smgc1, i_smgc2, i_zmg1, i_zmg3

HvOpD18

no match

 

HvOpD19

no match

 

HvOpD20

no match

 

HvOpD21

no match

 

HvOpD22

no match

 

HvOpD23

no match

 

HvOpD24

t32881aep

i_fmgl1, i_smgc3

HvOpD25

t36280aep

i_n_ec3

HvOpD26

t25412aep

i_n_ec1, i_n_ec3, i_n_ec4, i_n_ec5, i_n_en1

HvOpD27

no match

 

HvOpD28

no match

 

HvOpD29

t2106aep

i_n_ec1, i_n_ec3, i_n_en2

HvOpD30

t20043aep

i_n_ec2

HvOpD31

no match

 

HvOpD32

no match

 

HvOpD33

no match

 

HvOpD34

no match

 

HvOpD35

t29959aep

ecEp_nb, ecEp_nem, ecEp_SC1, ecEp_SC2, ecEp_bd, enEp_foot

HvOpD36

no match

 

HvOpD37

no match

 

HvOpD38

t27688aep

i_nem

  1. †Clustering according to data from Siebert et al. [52] derived using the interactive tool at https://portals.broadinstitute.org/single_cell/study/SCP260/stem-cell-differentiation-trajectories-in-hydra-resolved-at-single-cell-resolution
  2. *no match means no unique match to the Seibert et al. transcriptome. The top BLASt hit to these genes was a better match to another HvOp gene
  3. Cluster Label Abbreviation Key: bat: battery cell, bd: basal disk, db: doublet cluster, ec: ectoderm, ecEP: ectodermal epithelial cell, en: endoderm, enEP: endodermal epithelial cell, fmgl: female germ-line, gc: gland cell, gmgc: granular mucous gland cell, i: cell of the interstitial lineage, id: integration doublet, mgl: male germline, mp: multiplet, nb: nematoblast, n: neuronal cell, nem: nematocyte, pd.: suspected phagocytosis doublet, prog: progenitor, SC: stem cell, smgc: spumous mucous gland cell, tent: tentacle, zmg: zymogen gland cell