Skip to main content

Table 1 Microbial Taxa in the Oryctes rhinoceros Fat Body, Gut contents, and Surroundings

From: Transcriptome and microbiome of coconut rhinoceros beetle (Oryctes rhinoceros) larvae

Phylum; Order Closest Identifable taxon, % identity Fat Body Hind-gut Mid-gut Wood Pulp diH2O
Euryarchaeota; Methanobacteria Methanobacterium beijingense 97.72% 0 22 0 0 0
Euryarchaeota; Thermoplasmata Methanomethylophilaceae > 80% 0 31 0 0 0
Actinobacteria; Actinobacteria Tsukamurella serpentis 98.23% 0 12 0 0 0
Actinobacteria; Actinobacteria Cellulomonas fimi (and others) 98.49% 0 0 0 96 0
Actinobacteria; Actinobacteria Gryllotalpicola soli/kribbensis 98.99% 0 0 0 26 0
Bacteroidetes; Bacteroidia Bacteroidetes > 80% 10 0 0 0 0
Bacteroidetes; Ignavibacteria Melioribacteraceae > 80% 0 10 0 0 0
Chloroflexi; Anaerolineae Anaeolineaceae > 90% 0 14 0 0 0
Chloroflexi; Anaerolineae Anaeolineaceae > 90% 0 23 0 0 0
Elusimicrobia; Endomicrobia Endomicrobium > 95% 0 10 0 0 0
Firmicutes; Bacilli Bacillus cereus 99% 261 48 21 18 0
Firmicutes; Bacilli Bacillus drentensis 99% 0 10 0 0 0
Firmicutes; Bacilli Lysinibacillus sphaericus 99% 14 262 28 0 0
Firmicutes; Bacilli Trichococcus alkaliphilius 99.50% 0 0 0 10 0
Firmicutes; Bacilli Enterococcus termitis 98.73% 0 0 93 0 0
Firmicutes; Bacilli Lactobacillus sakei 99.50% 53 0 0 10 0
Firmicutes; Bacilli Lactococcus taiwanensis 95% 2751 86 27 42 0
Firmicutes; Clostridia Clostridium saccharoperbutylacetonicum 99.24% 50 0 0 0 0
Firmicutes; Clostridia Clostridium sporogenes 96.2% 16 0 0 0 0
Firmicutes; Clostridia Clostridium intestinale 97.63% 65 52 0 151 0
Firmicutes; Clostridia Clostridium homopropionicum 97.22% 61 0 0 0 0
Firmicutes; Clostridia Intestinimonas butyriciproducens 96.70% 10 91 0 0 0
Firmicutes; Clostridia Oscillibacter 93.67% 18 0 0 0 0
Firmicutes; Clostridia Ruminococcaceae > 90% 0 13 0 0 0
Firmicutes; Clostridia Ruminococcaceae > 90% 0 30 0 0 0
Firmicutes; Negativicutes Ruminococcaceae > 90% 30 14 23 0 0
Fusobacteria; Fusobacteriia Leptotrichiazeae > 80% 0 27 0 0 0
Gemmatimonadetes; Gemmatimonadetes Gemmatimonadaceae > 80% 0 0 0 14 0
Patescibacteria; Saccharimonadia Saccharimonadales < 80% 0 0 0 27 0
Patescibacteria; Saccharimonadia Saccharimonadales < 80% 20 0 13 0 0
Patescibacteria; Saccharimonadia Saccharimonadaceae > 90% 17 0 34 0 0
Proteobacteria; Alphaproteobacteria Micropepsaceae > 90% 0 0 0 22 0
Proteobacteria; Alphaproteobacteria Sphingobium czechense/rhizovicinum 97.98% 0 0 0 30 0
Proteobacteria; Deltaproteobacteria Polyangiaceae > 90% 0 12 0 0 0
Proteobacteria; Gammaproteobacteria Comamonadaceae > 95% 0 0 0 39 0
Proteobacteria; Gammaproteobacteria Paraburkholderia mimosarum/oxyphila 98.24% 0 0 0 13 0
Proteobacteria; Gammaproteobacteria Comamonas testosteroni 99.24% 0 14 0 0 0
Proteobacteria; Gammaproteobacteria Citrobacter koseri 99.49% 1444 1779 5559 72 122
Proteobacteria; Gammaproteobacteria Pseudomonas entomophila 98.73% 49 151 0 45 130
Proteobacteria; Gammaproteobacteria Sinobacteraceae > 90% 0 0 0 12 0
Proteobacteria; Gammaproteobacteria Frateuria 92.95% 0 26 0 294 0
Spirochaetes; Spirochaetia Treponema zuelzerae 97.21% 0 26 0 0 0
Synergistetes; Synergistia Thermovirga 92.68% 28 0 24 0 0
  1. Each line is a separate operational taxonomic unit (OTU) based on QIIME2 [23] analysis of the 16S metagenome data for the insect tissue and wood pulp in which they lived. The first two are archaea, the rest bacteria. The closest identifiable taxon to the OTU identified with BLASTn and the percentage sequence identity are given. The numbers are the number of reads from each metagenome for that OTU. If the OTU was also found in the deionized water (diH2O) negative control, the number of reads is given. OTUs found only in the control were omitted to save space