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Table 2 Quality of GBS data

From: Characterization of a wheat–tetraploid Thinopyrum elongatum 1E(1D) substitution line K17–841-1 by cytological and phenotypic analysis and developed molecular markers

Genotype

Raw base

(bp)

Clean base

(bp)

Effective rate

(%)

Error rate

(%)

Q20

(%)

Q30

(%)

GC

(%)

PI531718

6,496,632,288

6,496,632,288

100

0.03

95.97

93.68

43.95

PI531750

1,064,120,832

1,064,117,088

100

0.04

95.96

89.20

42.99

8801

1,254,284,064

1,254,281,472

100

0.05

95.00

87.17

42.13

K17–841-1

1,271,704,608

1,271,701,440

100

0.05

94.71

86.58

43.17

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BMC Genomics

ISSN: 1471-2164

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