Table 3 Sources of transcriptome assemblies used in this study
Transcriptomes | ||||
|---|---|---|---|---|
Species | Source/Accession no. | Size [Mbp] | Transcript count | Reference |
Coregonus clupeaformis (lake whitefish) | PhyloFish (phylofish.sigenae.org, last access: 05.10.2016) | 158.5 | 66,996 | [152] |
Esox lucius (northern pike) | GATF00000000.1 (NCBI GenBank) | 188.7 | 55,424 | [153] |
Oncorhynchus mykiss (rainbow trout) | Salmon Transcriptome website (salmon.cgrb.oregonstate.edu, last access: 05.10.2016) | 209.2 | 130,599 | [154] |
Oncorhynchus tshawytscha (Chinook salmon) | GSE59756 (NCBI Gene Expression Omnibus) | 159.8 | 183,740 | [155] |
Salvelinus fontinalis (brook trout) | PhyloFish (phylofish.sigenae.org, last access: 05.10.2016) | 166.0 | 69,441 | [152] |
Thymallus thymallus (European grayling) | PhyloFish (phylofish.sigenae.org, last access: 05.10.2016) | 160.9 | 67,157 | [152] |
Coregonus lavaretus (European whitefish) | earlier version of GGAO00000000.1 (NCBI GenBank; made accessible upon request) | 59.0 | 44,348 | [88] |
Salvelinus alpinus (Arctic charr) | earlier version of GGAP00000000.1 (NCBI GenBank; made accessible upon request) | 59.5 | 44,354 | [88] |
Salmo salar (Atlantic salmon) | earlier version of GGAQ00000000.1 (NCBI GenBank; made accessible upon request) | 63.0 | 44,554 | [88] |
Salmo trutta (brown trout) | earlier version of GGAR00000000.1 (NCBI GenBank; made accessible upon request) | 62.0 | 46,308 | [88] |
Genome | ||||
Species | Source/Accession no. | Size [Mbp] | Gene count | Reference |
Salmo salar (Atlantic salmon) | GCF_000233375.1 (NCBI RefSeq assembly) | 77.5 | 48,589 | [68] |