Trait1 | Class2 | no_of_SNP3 | class_mean4 | Ratio5 | Vgf ± SE6 | Vgo ± SE7 | Vg_total ± SE8 | Vgf/SNP9 | Vgf_Ratio10 |
---|---|---|---|---|---|---|---|---|---|
RFI | Intergenic region variants | 5,251,680 | 0.000461 | 0.997835 | 0.067 ± 0.015 | 0.048 ± 0.014 | 0.12 ± 0.01 | 0.001283 | 0.05765900 |
Downstream gene variants | 253,163 | 0.000478 | 1.034632 | 0.01 ± 0.012 | 0.105 ± 0.015 | 0.12 ± 0.01 | 0.004142 | 0.18608265 | |
Upstream gene variants | 285,798 | 0.000480 | 1.038961 | 0.002 ± 0.011 | 0.114 ± 0.015 | 0.12 ± 0.01 | 0.000644 | 0.02894225 | |
Synonymous variants | 32,019 | 0.000454 | 0.982684 | 0.01 ± 0.01 | 0.106 ± 0.014 | 0.12 ± 0.01 | 0.031869 | 1.43185934 | |
Intron variants | 1,987,366 | 0.000461 | 0.997835 | 0.039 ± 0.014 | 0.077 ± 0.015 | 0.12 ± 0.01 | 0.001966 | 0.08835385 | |
Missense variants | 17,654 | 0.000522 | 1.129870 | 0.006 ± 0.008 | 0.11 ± 0.013 | 0.12 ± 0.01 | 0.036643 | 1.64638613 | |
3′ UTR variants | 15,851 | 0.000490 | 1.060606 | 0.011 ± 0.007 | 0.105 ± 0.012 | 0.12 ± 0.01 | 0.070273 | 3.15738258 | |
5′ UTR variants | 3309 | 0.000515 | 1.114719 | 0.002 ± 0.005 | 0.114 ± 0.011 | 0.12 ± 0.01 | 0.053490 | 2.40333421 | |
Other regulatory regions | 6371 | 0.000501 | 1.084416 | 0 ± 0.007 | 0.119 ± 0.012 | 0.12 ± 0.01 | 0.000000 | 0.0000000 | |
DMI | Intergenic region variants | 5,251,680 | 0.000946 | 0.998944 | 0.219 ± 0.032 | 0.141 ± 0.03 | 0.36 ± 0.03 | 0.004173 | 0.15156143 |
Downstream gene variants | 253,163 | 0.000970 | 1.024287 | 0.011 ± 0.025 | 0.348 ± 0.033 | 0.36 ± 0.03 | 0.004527 | 0.16439637 | |
Upstream gene variants | 285,798 | 0.000967 | 1.021119 | 0.00001 ± 0.024 | 0.362 ± 0.033 | 0.36 ± 0.03 | 0.000000 | 0.00001300 | |
Synonymous variants | 32,019 | 0.000924 | 0.975713 | 0.009 ± 0.021 | 0.35 ± 0.031 | 0.36 ± 0.03 | 0.029379 | 1.06696756 | |
Intron variants | 1,987,366 | 0.000944 | 0.996832 | 0.119 ± 0.029 | 0.241 ± 0.032 | 0.36 ± 0.03 | 0.005984 | 0.21733452 | |
Missense variants | 17,654 | 0.001038 | 1.096093 | 0.00001 ± 0.02 | 0.362 ± 0.029 | 0.36 ± 0.02 | 0.000006 | 0.00020571 | |
3′ UTR variants | 15,851 | 0.001009 | 1.065470 | 0.032 ± 0.016 | 0.327 ± 0.027 | 0.36 ± 0.02 | 0.203703 | 7.39785415 | |
5' UTR variants | 3309 | 0.000978 | 1.032735 | 0.00001 ± 0.011 | 0.365 ± 0.026 | 0.37 ± 0.02 | 0.000030 | 0.00109752 | |
Other regulatory regions | 6371 | 0.001017 | 1.073918 | 0.00001 ± 0.015 | 0.362 ± 0.028 | 0.36 ± 0.02 | 0.000016 | 0.00057003 | |
ADG | Intergenic region variants | 5,251,680 | 0.000052 | 1.000000 | 0.009 ± 0.002 | 0.004 ± 0.002 | 0.014 ± 0.002 | 0.000178 | 0.05631654 |
Downstream gene variants | 253,163 | 0.000054 | 1.038462 | 0.0004 ± 0.001 | 0.013 ± 0.002 | 0.014 ± 0.002 | 0.000143 | 0.04529727 | |
Upstream gene variants | 285,798 | 0.000054 | 1.038462 | 0 ± 0.001 | 0.014 ± 0.002 | 0.014 ± 0.001 | 0.000000 | 0.00000000 | |
Synonymous variants | 32,019 | 0.000051 | 0.980769 | 0.001 ± 0.001 | 0.013 ± 0.002 | 0.014 ± 0.001 | 0.003891 | 1.22935097 | |
Intron variants | 1,987,366 | 0.000051 | 0.980769 | 0.003 ± 0.002 | 0.01 ± 0.002 | 0.014 ± 0.002 | 0.000176 | 0.05555651 | |
Missense variants | 17,654 | 0.000058 | 1.115385 | 0 ± 0.001 | 0.014 ± 0.001 | 0.014 ± 0.001 | 0.000000 | 0.00000000 | |
3′ UTR variants | 15,851 | 0.000054 | 1.038462 | 0.001 ± 0.001 | 0.013 ± 0.001 | 0.014 ± 0.001 | 0.005924 | 1.87143409 | |
5' UTR variants | 3309 | 0.000055 | 1.057692 | 0 ± 0.001 | 0.014 ± 0.001 | 0.014 ± 0.001 | 0.000000 | 0.00000000 | |
Other regulatory regions | 6371 | 0.000060 | 1.153846 | 0.001 ± 0.001 | 0.013 ± 0.001 | 0.014 ± 0.001 | 0.018176 | 5.74204463 | |
MWT | Intergenic region variants | 5,251,680 | 0.040609 | 0.998795 | 13.14 ± 1.47 | 7.93 ± 1.38 | 21.07 ± 1.42 | 0.250139 | 0.43808451 |
Downstream gene variants | 253,163 | 0.041833 | 1.028900 | 0.9 ± 1.1 | 20.14 ± 1.53 | 21.04 ± 1.34 | 0.354482 | 0.62082809 | |
Upstream gene variants | 285,798 | 0.041653 | 1.024472 | 0.76 ± 1.09 | 20.27 ± 1.53 | 21.03 ± 1.33 | 0.265853 | 0.46560607 | |
Synonymous variants | 32,019 | 0.040382 | 0.993212 | 0.71 ± 0.97 | 20.34 ± 1.45 | 21.05 ± 1.24 | 2.216215 | 3.88140336 | |
Intron variants | 1,987,366 | 0.040446 | 0.994786 | 6.3 ± 1.32 | 14.77 ± 1.48 | 21.07 ± 1.4 | 0.317024 | 0.55522447 | |
Missense variants | 17,654 | 0.044912 | 1.104629 | 0.00004 ± 0.75 | 21.14 ± 1.33 | 21.14 ± 1.08 | 0.000227 | 0.00039682 | |
3′ UTR variants | 15,851 | 0.041232 | 1.014118 | 0.27 ± 0.63 | 20.75 ± 1.27 | 21.03 ± 1.01 | 1.733070 | 3.03524000 | |
5' UTR variants | 3309 | 0.041624 | 1.023759 | 0.00004 ± 0.45 | 21.29 ± 1.19 | 21.29 ± 0.91 | 0.001209 | 0.00211709 | |
Other regulatory regions | 6371 | 0.043722 | 1.075360 | 0.00004 ± 0.65 | 21.05 ± 1.28 | 21.05 ± 1.02 | 0.000628 | 0.00109959 |