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Table 2 Recombination frequency of repeats within 50–250 bp range for 16 liverwort mitogenomes

From: Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

Species Length (bp) Identity (%) Direction Position Reads support master circle conformation Reads support alternative conformation Gene order state after recombination Genes affected
Bazzania japonica 51 94.12 direct 142,103–142,153 30 (68.18%) 14 (31.82%) unchanged trnSUGA
    141,693–141,743     
66 87.88 direct 70,639–70,704 39 (84.78%) 7 (15.22%) unchanged atp8
    70,053–70,118     
Conocephalum conicum 138 93.48 direct 85,167–85,304 148 (99.33%) 1 (0.67%) unchanged cox2 and cox3
    84,355–84,492     
Fossombronia cristula 73 98.63 inverted 60,943–61,014 67 (57.76%) 49 (42.24%) unchanged
    58,015–58,087     
95 86.32 direct 45,965–46,059 67 (60.91%) 43 (39.09%) unchanged
    46,130–46,221     
93 87.1 inverted 61,247–61,339 86 (81.9%) 19 (18.1%) unchanged
    58,038–58,130     
52 96.15 direct 55,570–55,619 80 (97.57%) 2 (2.43%) unchanged
    55,443–55,494     
73 98.63 direct 61,341–61,413 80 (98.73%) 1 (1.23%) unchanged
    60,943–61,014     
Frullania orientalis 75 96 inverted 12,671–12,745 12 (92.31%) 1 (7.69%) changed
    12,671–12,745     
Haplomitrium mnioides I 77 88.31 direct 87,784–87,860 48 (97.96%) 1 (2.04%) changed cox3 and trnSGCU
    40,562–40,637     
241 100 direct 140,823–141,063 95 (98.96%) 1 (1.04%) changed
    132,233–132,473     
51 90.2 direct 14,195–14,245 35 (97.2%) 1 (2.8%) unchanged
    14,085–14,135     
Heteroscyphus zollingeri 253 96.05 direct 66,972–67,223 27 (96.43%) 1 (3.57%) changed rps7
    21,339–21,591     
Monosolenium tenerum I 138 92.03 direct 86,651–86,787 94 (98.95%) 1 (1.05%) unchanged cox2 and cox3
    85,840–85,977     
Nowellia curvifolia 120 100 inverted 88,658–88,777 31 (60.78%) 20 (39.22%) changed cob
    5529–5648     
138 98.55 inverted 88,962–89,099 62 (78.48%) 17 (21.52%) changed cob
    5392–5529     
64 93.75 inverted 14,0191–14,0253 30 (96.77%) 1 (3.23%) changed
    14,0191–14,0253     
Odontoschisma grosseverrucosum 52 94.23 inverted 94,954–95,005 32 (40%) 48 (60%) changed cob
    5637–5688     
Pleurozia purpurea 140 98.57 direct 113,528–113,667 21 (95.46%) 1 (4.54%) unchanged atp1
    108,644–108,788     
Plicanthus hirtellus 54 98.15 inverted 112,052–112,105 31 (48.44%) 33 (51.56%) changed
    84,436–84,489     
Porella plumosa 62 90.32 inverted 45,426–45,485 20 (95.24%) 1 (4.76%) changed
    45,426–45,485     
Radula japonica 114 89.47 direct 68,120–68,227 49 (98%) 1 (2%) unchanged cox2 and cox3
    67,321–67,434     
189 99.47 direct 142,227–142,415 67 (98.53%) 1 (1.47%) changed
    79,402–79,590     
Riccia cavernosa 77 87.01 inverted 110,110–110,185 66 (95.65%) 3 (4.35%) changed
    110,110–110,185     
Treubia lacunosa 137 93.43 direct 72,748–72,884 82 (98.8%) 1 (1.2%) unchanged cox2 and cox3
    72,001–72,137     
Trichocolea tomentella 63 92.06 direct 151,893–15,1955 14 (82.35%) 3 (17.65%) unchanged trnSUGA
    151,475–15,1537