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Table 2 Recombination frequency of repeats within 50–250 bp range for 16 liverwort mitogenomes

From: Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination

Species

Length (bp)

Identity (%)

Direction

Position

Reads support master circle conformation

Reads support alternative conformation

Gene order state after recombination

Genes affected

Bazzania japonica

51

94.12

direct

142,103–142,153

30 (68.18%)

14 (31.82%)

unchanged

trnSUGA

   

141,693–141,743

    

66

87.88

direct

70,639–70,704

39 (84.78%)

7 (15.22%)

unchanged

atp8

   

70,053–70,118

    

Conocephalum conicum

138

93.48

direct

85,167–85,304

148 (99.33%)

1 (0.67%)

unchanged

cox2 and cox3

   

84,355–84,492

    

Fossombronia cristula

73

98.63

inverted

60,943–61,014

67 (57.76%)

49 (42.24%)

unchanged

–

   

58,015–58,087

    

95

86.32

direct

45,965–46,059

67 (60.91%)

43 (39.09%)

unchanged

–

   

46,130–46,221

    

93

87.1

inverted

61,247–61,339

86 (81.9%)

19 (18.1%)

unchanged

–

   

58,038–58,130

    

52

96.15

direct

55,570–55,619

80 (97.57%)

2 (2.43%)

unchanged

–

   

55,443–55,494

    

73

98.63

direct

61,341–61,413

80 (98.73%)

1 (1.23%)

unchanged

–

   

60,943–61,014

    

Frullania orientalis

75

96

inverted

12,671–12,745

12 (92.31%)

1 (7.69%)

changed

–

   

12,671–12,745

    

Haplomitrium mnioides I

77

88.31

direct

87,784–87,860

48 (97.96%)

1 (2.04%)

changed

cox3 and trnSGCU

   

40,562–40,637

    

241

100

direct

140,823–141,063

95 (98.96%)

1 (1.04%)

changed

–

   

132,233–132,473

    

51

90.2

direct

14,195–14,245

35 (97.2%)

1 (2.8%)

unchanged

–

   

14,085–14,135

    

Heteroscyphus zollingeri

253

96.05

direct

66,972–67,223

27 (96.43%)

1 (3.57%)

changed

rps7

   

21,339–21,591

    

Monosolenium tenerum I

138

92.03

direct

86,651–86,787

94 (98.95%)

1 (1.05%)

unchanged

cox2 and cox3

   

85,840–85,977

    

Nowellia curvifolia

120

100

inverted

88,658–88,777

31 (60.78%)

20 (39.22%)

changed

cob

   

5529–5648

    

138

98.55

inverted

88,962–89,099

62 (78.48%)

17 (21.52%)

changed

cob

   

5392–5529

    

64

93.75

inverted

14,0191–14,0253

30 (96.77%)

1 (3.23%)

changed

–

   

14,0191–14,0253

    

Odontoschisma grosseverrucosum

52

94.23

inverted

94,954–95,005

32 (40%)

48 (60%)

changed

cob

   

5637–5688

    

Pleurozia purpurea

140

98.57

direct

113,528–113,667

21 (95.46%)

1 (4.54%)

unchanged

atp1

   

108,644–108,788

    

Plicanthus hirtellus

54

98.15

inverted

112,052–112,105

31 (48.44%)

33 (51.56%)

changed

–

   

84,436–84,489

    

Porella plumosa

62

90.32

inverted

45,426–45,485

20 (95.24%)

1 (4.76%)

changed

–

   

45,426–45,485

    

Radula japonica

114

89.47

direct

68,120–68,227

49 (98%)

1 (2%)

unchanged

cox2 and cox3

   

67,321–67,434

    

189

99.47

direct

142,227–142,415

67 (98.53%)

1 (1.47%)

changed

–

   

79,402–79,590

    

Riccia cavernosa

77

87.01

inverted

110,110–110,185

66 (95.65%)

3 (4.35%)

changed

–

   

110,110–110,185

    

Treubia lacunosa

137

93.43

direct

72,748–72,884

82 (98.8%)

1 (1.2%)

unchanged

cox2 and cox3

   

72,001–72,137

    

Trichocolea tomentella

63

92.06

direct

151,893–15,1955

14 (82.35%)

3 (17.65%)

unchanged

trnSUGA

   

151,475–15,1537

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