Table 1 Quality assessment of raw RNA-seq data
Samples | Sample description | Total Raw Reads | Total Clean reads | Total mapped reads | Unique mapped reads | Read mapped Gene | Detected Gene Number | Clean Reads Q30 (%) |
|---|---|---|---|---|---|---|---|---|
CRI12_0h_Lf | CRI12L_CK0 | 45,076,438 | 44,843,338 | 89.61% | 81.76% | 67.89% | 52,438 | 95.02 |
CRI12_3h_Lf | CRI12L_SS3 | 36,371,236 | 36,165,990 | 88.47% | 80.32% | 66.27% | 51,586 | 95.09 |
CRI12_12h_Lf | CRI12L_SS12 | 54,172,122 | 53,667,540 | 87.62% | 80.42% | 64.58% | 54,345 | 95.3 |
CRI12_48h_Lf | CRI12L_SS48 | 46,780,058 | 46,370,366 | 89.51% | 82.27% | 67.83% | 52,851 | 95.26 |
CRI12_0h_Rt | CRI12R_CK0 | 49,346,508 | 48,798,312 | 86.73% | 80.54% | 65.40% | 55,285 | 95.41 |
CRI12_3h_Rt | CRI12R_SS3 | 41,632,004 | 41,352,494 | 86.06% | 80.25% | 64.34% | 56,495 | 95.72 |
CRI12_12h_Rt | CRI12R_SS12 | 48,589,958 | 48,120,064 | 83.06% | 77.40% | 63.15% | 55,264 | 95.64 |
CRI12_48h_Rt | CRI12R_SS48 | 40,994,510 | 40,614,906 | 87.29% | 81.28% | 66.03% | 54,023 | 95.39 |
_LAT40_0h_Lf | LAT40L_CK0 | 47,726,384 | 47,432,662 | 88.73% | 80.61% | 66.47% | 53,705 | 94.73 |
_LAT40_3h_Lf | LAT40L_SS3 | 51,429,486 | 51,097,604 | 87.88% | 80.53% | 65.48% | 53,530 | 95.26 |
LAT40_12h_Lf | LAT40L_SS12 | 49,696,922 | 49,450,576 | 88.86% | 81.93% | 67.14% | 53,544 | 97.05 |
LAT40_48h_Lf | LAT40L_SS48 | 42,032,304 | 41,587,888 | 89.07% | 81.74% | 67.64% | 52,073 | 95.58 |
LAT40_0h_Rt | LAT40R_CK0 | 41,946,322 | 41,582,628 | 85.71% | 79.58% | 64.06% | 55,615 | 95.4 |
LAT40_3h_Rt | LAT40R_SS3 | 54,179,820 | 53,844,398 | 87.90% | 82.11% | 65.56% | 57,263 | 95.5 |
LAT40_12h_Rt | LAT40R_SS12 | 50,560,404 | 50,200,318 | 84.77% | 78.76% | 64.65% | 55,536 | 95.47 |
LAT40_48h_Rt | LAT40R_SS48 | 49,685,100 | 49,157,194 | 86.71% | 80.52% | 65.01% | 54,298 | 95.4 |
MAR85_0h_Lf | MAR85L_CK0 | 57,496,402 | 57,163,534 | 88.71% | 80.98% | 67.38% | 54,338 | 95.07 |
MAR85_3h_Lf | MAR85L_SS3 | 38,567,268 | 38,288,104 | 89.73% | 82.12% | 67.73% | 53,318 | 95.35 |
MAR85_12h_Lf | MAR85L_SS12 | 44,010,240 | 43,575,168 | 89.29% | 82.20% | 67.42% | 54,173 | 96.15 |
MAR85_48h_Lf | MAR85L_SS48 | 37,316,038 | 36,970,900 | 89.06% | 81.42% | 67.05% | 52,613 | 95.71 |
MAR85_0h_Rt | MAR85R_CK0 | 46,322,192 | 45,881,516 | 83.88% | 77.79% | 62.43% | 55,098 | 95.55 |
MAR85_3h_Rt | MAR85R_SS3 | 38,207,814 | 37,865,864 | 85.65% | 79.82% | 64.02% | 55,040 | 95.4 |
MAR85_12h_Rt | MAR85R_SS12 | 39,974,434 | 39,617,928 | 88.30% | 82.30% | 66.49% | 54,798 | 95.35 |
MAR85_48h_Rt | MAR85R_SS48 | 54,371,748 | 53,967,842 | 88.31% | 82.22% | 65.65% | 55,054 | 96.14 |