Fig. 7

Classification and expression profile of Transposable Elements (TEs) under ABM or TXM treatments. a Venn diagram represents shared, and unique DE TEs observed under three treatments of ABM. Total, unique (outside) and shared (inside) DE TEs are specified. b Shared and unique DE TEs perceived under different treatments of TXM. c Venn diagram depicts special, and co-expressed DE TEs expressed under ABM and TXM applications. d Bar graphs represent distribution of total DE TEs into three classes, i.e., Transposons 149, Retrotransposons 164 and Miniature Inverted-repeat TEs (MITE) 175 on the basis of their function. The y-axis represents number of expected DE TEs along with their percentages at the top of each bar and their classification is shown on x-axis. e Graph presents density of significant DE TEs and random TEs. The y-axis represents density of DE TEs and TEs (maximum value is 1) while x-axis shows distance to nearest genes (scale given in bp). P-value of significance is shown on the top of y-axis. f Pie chart represents proportions of DE TEs under pesticides treatments and interaction of DE TEs with DELs or lncRNAs. g Heat map shows FPKM values of TEs and adjoining genes in response to the studied pesticides. Color scale indicates expression level of TEs and their neighboring genes. Line graph on the right side of heat map represent correlation co-efficient (R) of TEs and DEGs. Most of the TEs positively correlates their neighboring genes. h Example of TE affecting expression level of its neighboring gene. Map shows graphical representation of TE 48405 and HS cognate protein 70–1 gene along with UTR and CDS regions indicating positive correlation of the TE expression and GE