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Table 2 Putative proteinase families predicted in the Entodinium caudatum transcriptome

From: The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features

Catalytic Type

Family

No. of Transcripts

No. of transcripts with SPsa

No. of transcripts with TMsb

No. of transcripts with both SPs and TMs

Aspartic (A)

A01A

27

10

12

7

A01B

7

 

2

 

A02B

1

1

  

A22A

12

   

A22B

4

 

2

1

A28

2

 

1

 

Total

52

 

17

8

Cysteine (C)

C01A

41

15

6

4

C01B

2

   

C02A

34

2

  

C04

6

   

C12

3

   

C13

7

1

3

1

C19

222

1

8

 

C23

2

   

C26

9

2

3

 

C40

8

2

1

1

C48

28

   

C50

1

   

C54

32

   

C56

3

   

C59

1

   

C65

3

   

C67

1

   

C69

6

   

C78

1

   

C83

1

   

C85A

8

   

C87

1

   

C95

4

1

 

2

C97

2

   

Total

422

35

21

8

Metallo (M)

M01

14

2

  

M03A

3

 

1

 

M03B

4

   

M08

34

10

5

3

M12B

1

   

M14A

2

   

M14B

4

   

M14D

2

   

M15C

1

   

M15D

2

 

1

 

M16A

9

 

1

 

M16B

1

   

M16C

2

   

M16X

2

   

M18

1

   

M20C

1

   

M20X

2

   

M24A

6

 

2

 

M24B

1

   

M24X

4

 

1

 

M28A

1

   

M28X

1

   

M38

2

   

M41

1

   

M43A

1

   

M48A

2

 

2

 

M54

4

   

M56

1

 

1

 

M67A

3

 

1

 

M76

1

   

M79

4

 

3

 

Total

116

12

17

3

Mixed (P)

P01

1

1

  

Total

1

1

  

Serine (S)

S01A

4

   

S01B

30

   

Total

34

   

Total

 

615

   
  1. a SP signal peptide. bTM transmembrane domains
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