Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis

Zumaquero, A.; Kanematsu, S.; Nakayashiki, H.; Matas, A.; Martínez-Ferri, E.; Barceló-Muñóz, A.; Pliego-Alfaro, F.; López-Herrera, C.; Cazorla, F. M.; Pliego, C.

doi:10.1186/s12864-019-6387-5

Table 3 R. necatrix genes encoding cell wall degrading enzymes

From: Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis

Gene ID	Description	Fold Change^a
Cell Wall Degrading Enzymes
SAMD00023353_0503130	Putative Glycoside hydrolase family 61 protein	511.82
SAMD00023353_6500680	Glycoside hydrolase family 61 protein	259.37
SAMD00023353_4001240	Glycosyl hydrolase family 43 protein	226.29
SAMD00023353_4000040	Glycoside hydrolase family 128 protein	201.63
SAMD00023353_5900080	Putative glycoside hydrolase family 61	193.76
SAMD00023353_2700270	Putative endoglucanase	166.44
SAMD00023353_10700130	Glycoside hydrolase family 128 protein	162.43
SAMD00023353_3200340	Glycoside hydrolase family 61 protein	155.24
SAMD00023353_0105480	Glycosyl hydrolase family 7	132.66
SAMD00023353_11500050	Cellobiohydrolase II	95.38
SAMD00023353_3900390	Probable endoglucanase	88.85
SAMD00023353_1201160	Glycoside hydrolase family 3 protein	71.42
SAMD00023353_4000610	Glycoside hydrolase family 74 protein	64.97
SAMD00023353_5100270	Glycoside hydrolase family 5 protein	56.75
SAMD00023353_3601090	Putative glycoside hydrolase family 31	54.51
SAMD00023353_1700720	Glycosyl hydrolase family 10	52.82
SAMD00023353_0202710	Glycoside hydrolase family 53 protein	42.82
SAMD00023353_3700510	Glycoside hydrolase family 61 protein	37.07
SAMD00023353_5100760	Glycosylhydrolase family 61–5	36.69
SAMD00023353_0502040	Glycoside hydrolase family 5 protein	28.51
SAMD00023353_1901740	Glycosyl hydrolase family 1	24.70
SAMD00023353_3000290	Glycosyl hydrolase family 16	14.86
SAMD00023353_0204000	Glycosyl hydrolase family 26	11.21
SAMD00023353_7600160	Glycosyl hydrolase family 61	9.35
SAMD00023353_4000450	Glycosyl hydrolase family 18	7.44
SAMD00023353_1601380	Cutinase	7.15
SAMD00023353_0400070	Glycosyl hydrolase family 76	2.77
SAMD00023353_0201450	Glycosyl hydrolase	2.76
SAMD00023353_1002100	Glycosyl hydrolase	2.28
SAMD00023353_0101450	Glycosyl hydrolase	2.24

^aRNA-Seq fold change calculated by comparing R. necatrix growth on roots vs Potato Dextrose Agar

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ISSN: 1471-2164

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