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Table 4 Genes of R. necatrix potentially involved in pathogenesis

From: Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis

Gene IDDescriptionFold Changea
Genes Related to Proteases
 SAMD00023353_1500930Putative acid proteinase protein411.34
 SAMD00023353_6300370Putative subtilisin-like protein13.44
 SAMD00023353_3200760Putative subtilisin-like protein12.19
 SAMD00023353_4000440Putative aspartyl protease4.82
 SAMD00023353_0403740Related to subtilisin DY2.60
Genes Related to Toxins Production
 SAMD00023353_5500610Putative aflatoxin B1 aldehyde reductase member 218.65
 SAMD00023353_3901210Putative averantin oxidoreductase13.89
 SAMD00023353_10000060Putative toxin biosynthesis4.81
 SAMD00023353_1501590Putative toxin biosynthesis protein4.30
 SAMD00023353_11700090Sterigmatocystin 8-O-methyltransferase3.29
Genes Related to Detoxification of Toxic Compounds
 SAMD00023353_5200870catA, catalase157.78
 SAMD00023353_3600430Putative cycloheximide resistance protein92.12
 SAMD00023353_12800020Related to pisatin demethylase cytochrome P45090.24
 SAMD00023353_7000300GMC oxidoreductase41.39
 SAMD00023353_8000300Beta-lactamase family protein40.99
 SAMD00023353_1100640GMC oxidoreductase28.74
 SAMD00023353_10400180Glucose-methanol-choline (GMC) oxidoreductase21.40
 SAMD00023353_10400170Glucose-methanol-choline (GMC) oxidoreductase19.54
 SAMD00023353_0701730Putative multidrug resistance protein fnx112.69
 SAMD00023353_6600160Beta-lactamase family protein11.24
 SAMD00023353_0702510Putative ciclohexymide resistance protein7.18
 SAMD00023353_0902760Putative MFS aflatoxin efflux pump detoxificación3.87
 SAMD00023353_4900180Putative arrestin domain containing protein3.40
 SAMD00023353_2900030GMC oxidoreductase2.77
 SAMD00023353_0100280Putative tetracycline resistance protein TCRI2.76
 SAMD00023353_11800200Putative drug resistance protein2.68
 SAMD00023353_3200110Putative pisatin demethylase2.39
 SAMD00023353_3500410GMC oxidoreductase2.19
 SAMD00023353_2201610Metallo-beta-lactamase superfamily protein2.07
Genes Related to Transport of Toxic Compounds
 SAMD00023353_2601150ABC transporter7.37
 SAMD00023353_2501030ABC transporter6.64
 SAMD00023353_3000620ABC-2 type transporter5.38
 SAMD00023353_10000080Putative MFS multidrug transporter protein3.28
 SAMD00023353_2200710MFS transporter2.80
 SAMD00023353_6200040ABC transporter cdr42.39
 SAMD00023353_7300370Drug proton antiporter yhk82.21
Genes Related to Gibberelin Biosynthesis
 SAMD00023353_10100030GA4 desaturase family protein38.02
 SAMD00023353_1901120Gibberellin 20-oxidase2.39
Gene Related to Gene Silencing
 SAMD00023353_0801000Argonaute siRNA chaperone complex subunit Arb12.38
  1. aRNA-Seq fold change calculated by comparing R. necatrix growth on roots vs Potato Dextrose Agar