Table 1 H. seropedicae SmR1 sRNAs identified in Rfam
Predicted | Rfam | |||||||
|---|---|---|---|---|---|---|---|---|
sRNA | size | GC% | ID | Acession | Start | End | Bit score | e-value |
Hsnc001 | 99 | 65.66 | 4.5S | RF00169 | 1 | 99 | 76.4 | 8E-19 |
Hsnc002 | 111 | 60.36 | Fluoride riboswitch | RF01734 | 8 | 81 | 50.3 | 4.4e-10 |
Hsnc006 | 94 | 56.38 | sucA RNA motif | RF01070 | 12 | 93 | 79.8 | 2.3e-16 |
Hsnc029 | 100 | 61.00 | ZMP/ZTP riboswitch | RF01750 | 1 | 100 | 59.3 | 2.6e-09 |
Hsnc035 | 169 | 65.09 | FMN riboswitch | RF00050 | 1 | 169 | 112.6 | 5.3e-28 |
Hsnc050 | 177 | 53.67 | ssrS (6S) | RF00013 | 1 | 177 | 67.3 | 2.5e-14 |
Hsnc059 | 93 | 49.46 | Betaproteobacteria toxic RNA | RF02278 | 25 | 93 | 59.6 | 1.4e-12 |
Hsnc063 | 115 | 43.48 | Betaproteobacteria toxic RNA | RF02278 | 48 | 115 | 62.4 | 3.4e-13 |
Hsnc083 | 384 | 52.34 | tmRNA | RF00023 | 1 | 381 | 193.0 | 4.6e-57 |
Hsnc086 | 97 | 47.42 | Betaproteobacteria toxic sRNA | RF02278 | 34 | 97 | 64.7 | 7.6e-14 |
Hsnc107 | 98 | 43.88 | Betaproteobacteria toxic sRNA | RF02278 | 31 | 97 | 61.1 | 6.1e-13 |
Hsnc109 | 293 | 58.36 | TPP riboswitch | RF00059 | 86 | 196 | 55.6 | 2.3e-10 |
Hsnc110 | 101 | 64.36 | ykkC-yxkD | RF00442 | 1 | 101 | 99.0 | 1.8e-23 |
Hsnc111 | 335 | 61.19 | RNA RNaseP | RF00010 | 1 | 335 | 212.1 | 1.1e-68 |
Hsnc112 | 184 | 63.04 | yybP-ykoY | RF00080 | 16 | 184 | 47.7 | 6E-12 |
Hsnc113 | 90 | 65.56 | SAH riboswitch | RF01057 | 1 | 90 | 49.1 | 9.6e-09 |
Hsnc114 | 373 | 51.47 | 5′ UTR cspA | RF01766 | 1 | 373 | 94.3 | 1.6e-24 |
Hsnc115 | 247 | 63.97 | Cobalamin riboswitch | RF00174 | 1 | 247 | 111.2 | 1.6e-30 |
Hsnc116 | 100 | 60.0 | ykkC-yxkD | RF00442 | 1 | 100 | 93.4 | 4.8e-22 |
Hsnc117 | 387 | 48.97 | 5′ UTR cspA | RF01766 | 1 | 388 | 86.7 | 2.7e-22 |