Skip to main content

Table 1 Differentially expressed genes (DEGs) among PBS injected TF, TR, and D groups relative to W. DEGs with a fold change ≥3 are shown in bold (significant by Baggerley’s test, normalized FDR correction P-value < 0.01)

From: Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon

TissueGeneAnnotationFold change
TR/WTF/WD/W
Head kidneyunigene22417332Aquaporin 1−1.51.1−3.5
 unigene22417191ATP-dependent RNA helicase DHX30-like6.43.11.7
 unigene22417189ATP-dependent RNA helicase DHX30-like4.92.61.6
 unigene22386458B chain crystal structure of avidin2.84.1−2.0
 unigene22392248Complement C1q-like protein 4 precursor−3.6−1.9−2.0
 unigene22390619Leucine-rich repeat-containing protein 194.63.01.7
 unigene22396071Methyltransferase DDB-like6.24.13.1
 unigene22408729Perforin-1-like isoform X1−1.5−1.1−3.7
 unigene22418289Sodium channel protein type 4 subunit alpha B53.911.9−2.4
 unigene22385893Uncharacterized protein LOC109903204−2.2−1.4−5.2
 unigene22389921Uncharacterized protein LOC109904151−1.5−1.0−3.6
 unigene22393685Uromodulin−1.31.1−3.6
 unigene22425942ORF2 protein3.81.21.2
Liverunigene22426268Fatty acid-binding protein 1−1.1−4.0−2.7
 unigene22387365Microfibril-associated glycoprotein 4-like−3.2−1.51.3
 unigene22426266Saxitoxin and tetrodotoxin-binding protein 1−3.5−1.51.3
 unigene22418289Sodium channel protein type 4 subunit alpha B30.28.9−1.0
 unigene22391480Transmembrane protein 116−8.9−2.31.0
 unigene22426238C-C motif chemokine 19-like−4.33.01.8
  1. PBS phosphate-buffered saline, PGN peptidoglycan, Poly I:C polyinosinic-polycytidylic acid. W, non-transgenic (wild-type) coho salmon on a full satiation ration, TF GH transgenic coho salmon on a full satiation ration, TR GH transgenic coho salmon on restricted ration equal to that consumed by W, D domesticated coho salmon on a full satiation ration