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Table 1 Differentially expressed genes (DEGs) among PBS injected TF, TR, and D groups relative to W. DEGs with a fold change ≥3 are shown in bold (significant by Baggerley’s test, normalized FDR correction P-value < 0.01)

From: Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon

Tissue Gene Annotation Fold change
TR/W TF/W D/W
Head kidney unigene22417332 Aquaporin 1 −1.5 1.1 −3.5
  unigene22417191 ATP-dependent RNA helicase DHX30-like 6.4 3.1 1.7
  unigene22417189 ATP-dependent RNA helicase DHX30-like 4.9 2.6 1.6
  unigene22386458 B chain crystal structure of avidin 2.8 4.1 −2.0
  unigene22392248 Complement C1q-like protein 4 precursor −3.6 −1.9 −2.0
  unigene22390619 Leucine-rich repeat-containing protein 19 4.6 3.0 1.7
  unigene22396071 Methyltransferase DDB-like 6.2 4.1 3.1
  unigene22408729 Perforin-1-like isoform X1 −1.5 −1.1 −3.7
  unigene22418289 Sodium channel protein type 4 subunit alpha B 53.9 11.9 −2.4
  unigene22385893 Uncharacterized protein LOC109903204 −2.2 −1.4 −5.2
  unigene22389921 Uncharacterized protein LOC109904151 −1.5 −1.0 −3.6
  unigene22393685 Uromodulin −1.3 1.1 −3.6
  unigene22425942 ORF2 protein 3.8 1.2 1.2
Liver unigene22426268 Fatty acid-binding protein 1 −1.1 −4.0 −2.7
  unigene22387365 Microfibril-associated glycoprotein 4-like −3.2 −1.5 1.3
  unigene22426266 Saxitoxin and tetrodotoxin-binding protein 1 −3.5 −1.5 1.3
  unigene22418289 Sodium channel protein type 4 subunit alpha B 30.2 8.9 −1.0
  unigene22391480 Transmembrane protein 116 −8.9 −2.3 1.0
  unigene22426238 C-C motif chemokine 19-like −4.3 3.0 1.8
  1. PBS phosphate-buffered saline, PGN peptidoglycan, Poly I:C polyinosinic-polycytidylic acid. W, non-transgenic (wild-type) coho salmon on a full satiation ration, TF GH transgenic coho salmon on a full satiation ration, TR GH transgenic coho salmon on restricted ration equal to that consumed by W, D domesticated coho salmon on a full satiation ration