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Table 1 Assembly statistics of the six near-complete Alternaria genome sequences

From: Comparative genomics of Alternaria species provides insights into the pathogenic lifestyle of Alternaria brassicae – a pathogen of the Brassicaceae family

 

A. brassicae J3a

A. alternata PN1

A. alternata PN2

A. solani altNL03003b

A. brassicicola abra43c

A. alternata ATCC34957d

Assembly size (Mb)

34.14

33.77

33.53

32.78

31.04

33.48

No. of contigs

17

14

15

10

29

27

No. of contigs (> 10,000 bp)

17

13

15

10

29

25

Largest contig (Mb)

7.1

6.86

6.76

6.94

3.3

3.96

N50

2.98

3.09

3.1

2.87

2.1

2.83

GC (%)

50.7

50.98

50.95

51.32

50.85

50.95

Repeat content (%)

9.33

2.43

2.64

5.71

9.3

2.71

Predicted genes

11,593

11,495

11,387

11,804

10,261

12,500

  1. a - [10], b - [13], c - [11], d - [12]