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Table 4 Statistics of the analysis of 6P translocation fragment-specific transcripts in Pubing 3035

From: Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

Transcript ID

Fukuho (6P−) read count

BC2F2_6P− read count

BC2F2_6P+ read count

Pubing 3035 (6P+) read count

log2FCa

lfcSEb

statc

Pvalued

padje

Polymorphic markers

transcript/2610

0

2

86

127

−7.04

1.18

−5.95

2.62E-09

2.30E-05

WGRG7

transcript/24685

1

2

691

372

−8.79

0.96

−9.12

7.52E-20

1.55E-15

WGRG8

TRINITY_DN94508_c0_g1_i1

0

1

74

48

−7.25

1.58

−4.59

4.42E-06

9.73E-03

WGRG8

transcript/7882

0

0

27

26

−7.49

1.77

−4.23

2.31E-05

3.84E-02

WGRG9

transcript/29056

0

0

28

47

−7.99

1.71

−4.67

3.03E-06

8.11E-03

WGRG10

transcript/34773

0

0

144

174

−10.08

1.53

−6.59

4.29E-11

5.29E-07

WGRG11

transcript/16718

1

1

34

56

−5.82

1.28

−4.53

5.87E-06

1.17E-02

WGRG12

TRINITY_DN118140_c0_g2_i2

0

0

64

118

−9.27

1.60

−5.80

6.65E-09

3.73E-05

WGRG12

transcript/14210

0

0

69

119

−9.32

1.59

−5.86

4.50E-09

3.47E-05

WGRG13

transcript/9968

0

0

30

39

−7.87

1.71

−4.60

4.16E-06

9.49E-03

WGRG13

TRINITY_DN12662_c0_g1_i1

0

0

64

87

−9.00

1.59

−5.66

1.49E-08

7.09E-05

WGRG15

TRINITY_DN75295_c0_g1_i1

0

1

52

60

−7.13

1.57

−4.53

5.85E-06

1.17E-02

WGRG15

  1. Notes: a represents log2(fold change) for translocation lines (Pubing 3035 and BC2F2_6P+) versus non-translocation lines (Fukuho and BC2F2_6P−); b represents standard error; c represents Wald statistic; d represents Wald test P value; e represents adjusted P values