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Table 3 List of the differentially expressed genes in mock-ATL07 within the most enriched GO terms, which were related to oxidative pathways and stress responses. Highlighted as A are the genes that were differentially expressed in the mock-treated ATL07 plants, AB are the genes that were differentially expressed in both ATL07 mock and ATLWT PVY-inoculated plants

From: Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato

Related to oxidative pathway

A: ATL07mock B:ATLWT PVY

Response

Go Term

Category

Description

GeneID

ProteinID

Annotation

 AB

Down/Down

GO:0006979

P

response to oxidative stress

102,578,720

XP_015170961.1

L-ascorbate_peroxidase_cytosolic(LOC102578720)

 AB

Down/Down

GO:0006979

P

response to oxidative stress

102,594,742

XP_015162428.1

uncharacterized (LOC102594742)

 AB

Down/Down

GO:0006979

P

response to oxidative stress

102,596,945

XP_006341175.1

uncharacterized (LOC102596945)

 AB

Down/Down

GO:0042542

P

response to hydrogen peroxide

102,578,969

XP_006346594.1

26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969)

 AB

Down/Down

GO:0042542

P

response to hydrogen peroxide

102,583,475

XP_015170470.1

heat_shock_70_kDa_protein_8(LOC102583475)

 AB

Down/Down

GO:0042542

P

response to hydrogen peroxide

102,591,190

XP_006342905.1

17.4_kDa_class_III_heat_shock_protein(LOC102591190)

 AB

Down/Down

GO:0000302

P

response to reactive oxygen species

102,594,103

XP_006346757.1

15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103)

 AB

Down/Down

GO:0000304

P

response to singlet oxygen

102,599,238

NP_001305587.1

(EE)-geranyllinalool_synthase(LOC102599238)

 A

Up

GO:0016491

F

oxidoreductase activity

102,581,622

XP_006345577.1

delta(8)-fatty-acid_desaturase-like (LOC102581622)

 A

Up

GO:0016491

F

oxidoreductase activity

102,581,792

XP_006357900.1

gibberellin_20_oxidase_1(LOC102581792)

 A

Up

GO:0016491

F

oxidoreductase activity

102,581,872

XP_006350059.1

protein_ECERIFERUM_3-like (LOC102581872)

 A

Down

GO:0016705

F

oxidoreductase activity

102,597,820

XP_006363763.1

cytochrome_P450_CYP72A219-like (LOC102597820)

 A

Down

GO:0016705

F

oxidoreductase activity

102,604,056

XP_006367342.1

cytochrome_P450_83B1-like (LOC102604056)

 A

Up

GO:0055114

F

oxidative -reduction process

102,592,722

XP_006358835.1

cytochrome_b561_and_DOMON_domain-containing_protein_At3g25290-like (LOC102592722)

 AB

Up/Up

GO:0016709

F

oxidoreductase activity

102,598,017

XP_006362126.1

cytochrome_P450_78A6-like (LOC102598017)

 A

Down

GO:00055114

F

oxidative -reduction process

102,579,798

XP_006358956.1

homogentisate_12-dioxygenase (LOC102579798)

 A

Up

GO:0016705

F

oxidoreductase activity

102,603,519

XP_006350395.1

premnaspirodiene_oxygenase-like (LOC102603519)

 A

Up

GO:0016705

F

oxidoreductase activity

102,603,857

NP_001305614.1

premnaspirodiene_oxygenase(LOC102603857)

 A

Up

GO:0016705

F

oxidoreductase activity

102,577,568

NP_001275219.1

CYP86A33_fatty_acid_omega-hydroxylase (LOC102577568)

Related to stress response

 AB

Down/Down

GO:0006950

P

response to stress

102,596,667

XP_015166769.1

low-temperature-induced_65_kDa_protein-like (LOC102596667)

 AB

Down/Down

GO:0006950

P

response to stress

102,597,686

XP_015160032.1

late_embryogenesis_abundant_protein-like (LOC102597686)

 AB

Down/Down

GO:0006950

P

response to stress

102,602,565

XP_006361910.1

low-temperature-induced_78_kDa_protein-like (LOC102602565)

 AB

Down/Down

GO:0006950

P

response to stress

107,057,685

XP_015160026.1

abscisic_acid_and_environmental_stress-inducible_protein_TAS14-like (LOC107057685)

 AB

Down/Down

GO:0009611

P

response to wounding

102,599,238

NP_001305587.1

(EE)-geranyllinalool_synthase(LOC102599238)

 AB

Down/Down

GO:0009408

P

response to heat

102,578,969

XP_006346594.1

26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969)

 AB

Down/Down

GO:0009408

P

response to heat

102,583,475

XP_015170470.1

heat_shock_70_kDa_protein_8(LOC102583475)

 AB

Down/Down

GO:0009408

P

response to heat

102,584,371

XP_006345019.1

22.7_kDa_class_IV_heat_shock_protein-like (LOC102584371)

 AB

Down/Down

GO:0009408

P

response to heat

102,587,639

XP_006338640.1

18.1_kDa_class_I_heat_shock_protein-like (LOC102587639)

 AB

Down/Down

GO:0009408

P

response to heat

102,589,078

XP_015170489.1

17.4_kDa_class_I_heat_shock_protein-like (LOC102589078)

 AB

Down/Down

GO:0009408

P

response to heat

102,589,396

XP_006360822.1

17.4_kDa_class_I_heat_shock_protein-like (LOC102589396)

 AB

Down/Down

GO:0009408

P

response to heat

102,591,190

XP_006342905.1

17.4_kDa_class_III_heat_shock_protein(LOC102591190)

 AB

Down/Down

GO:0009408

P

response to heat

102,594,103

XP_006346757.1

15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103)

 AB

Down/Down

GO:0009408

P

response to heat

102,601,494

XP_006349271.1

22.7_kDa_class_IV_heat_shock_protein-like (LOC102601494)

 A

Down

GO:0009416

P

response to light stimulus

102,600,485

XP_015164872.1

protein_LIGHT-DEPENDENT_SHORT_HYPOCOTYLS_10-like (LOC102600485)

 AB

Down/Down

GO:0009644

P

response to high light intensity

102,583,475

XP_015170470.1

heat_shock_70_kDa_protein_8(LOC102583475)

 AB

Down/Down

GO:0043617

P

cellular response to sucrose starvation

102,577,576

XP_006344055.1

asparagine_synthetase_[glutamine-hydrolyzing](LOC102577576)