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Table 3 List of the differentially expressed genes in mock-ATL07 within the most enriched GO terms, which were related to oxidative pathways and stress responses. Highlighted as A are the genes that were differentially expressed in the mock-treated ATL07 plants, AB are the genes that were differentially expressed in both ATL07 mock and ATLWT PVY-inoculated plants
| Related to oxidative pathway | |||||||
|---|---|---|---|---|---|---|---|
| A: ATL07mock B:ATLWT PVY | Response | Go Term | Category | Description | GeneID | ProteinID | Annotation |
| AB | Down/Down | GO:0006979 | P | response to oxidative stress | 102,578,720 | XP_015170961.1 | L-ascorbate_peroxidase_cytosolic(LOC102578720) |
| AB | Down/Down | GO:0006979 | P | response to oxidative stress | 102,594,742 | XP_015162428.1 | uncharacterized (LOC102594742) |
| AB | Down/Down | GO:0006979 | P | response to oxidative stress | 102,596,945 | XP_006341175.1 | uncharacterized (LOC102596945) |
| AB | Down/Down | GO:0042542 | P | response to hydrogen peroxide | 102,578,969 | XP_006346594.1 | 26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969) |
| AB | Down/Down | GO:0042542 | P | response to hydrogen peroxide | 102,583,475 | XP_015170470.1 | heat_shock_70_kDa_protein_8(LOC102583475) |
| AB | Down/Down | GO:0042542 | P | response to hydrogen peroxide | 102,591,190 | XP_006342905.1 | 17.4_kDa_class_III_heat_shock_protein(LOC102591190) |
| AB | Down/Down | GO:0000302 | P | response to reactive oxygen species | 102,594,103 | XP_006346757.1 | 15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103) |
| AB | Down/Down | GO:0000304 | P | response to singlet oxygen | 102,599,238 | NP_001305587.1 | (EE)-geranyllinalool_synthase(LOC102599238) |
| A | Up | GO:0016491 | F | oxidoreductase activity | 102,581,622 | XP_006345577.1 | delta(8)-fatty-acid_desaturase-like (LOC102581622) |
| A | Up | GO:0016491 | F | oxidoreductase activity | 102,581,792 | XP_006357900.1 | gibberellin_20_oxidase_1(LOC102581792) |
| A | Up | GO:0016491 | F | oxidoreductase activity | 102,581,872 | XP_006350059.1 | protein_ECERIFERUM_3-like (LOC102581872) |
| A | Down | GO:0016705 | F | oxidoreductase activity | 102,597,820 | XP_006363763.1 | cytochrome_P450_CYP72A219-like (LOC102597820) |
| A | Down | GO:0016705 | F | oxidoreductase activity | 102,604,056 | XP_006367342.1 | cytochrome_P450_83B1-like (LOC102604056) |
| A | Up | GO:0055114 | F | oxidative -reduction process | 102,592,722 | XP_006358835.1 | cytochrome_b561_and_DOMON_domain-containing_protein_At3g25290-like (LOC102592722) |
| AB | Up/Up | GO:0016709 | F | oxidoreductase activity | 102,598,017 | XP_006362126.1 | cytochrome_P450_78A6-like (LOC102598017) |
| A | Down | GO:00055114 | F | oxidative -reduction process | 102,579,798 | XP_006358956.1 | homogentisate_12-dioxygenase (LOC102579798) |
| A | Up | GO:0016705 | F | oxidoreductase activity | 102,603,519 | XP_006350395.1 | premnaspirodiene_oxygenase-like (LOC102603519) |
| A | Up | GO:0016705 | F | oxidoreductase activity | 102,603,857 | NP_001305614.1 | premnaspirodiene_oxygenase(LOC102603857) |
| A | Up | GO:0016705 | F | oxidoreductase activity | 102,577,568 | NP_001275219.1 | CYP86A33_fatty_acid_omega-hydroxylase (LOC102577568) |
| Related to stress response | |||||||
| AB | Down/Down | GO:0006950 | P | response to stress | 102,596,667 | XP_015166769.1 | low-temperature-induced_65_kDa_protein-like (LOC102596667) |
| AB | Down/Down | GO:0006950 | P | response to stress | 102,597,686 | XP_015160032.1 | late_embryogenesis_abundant_protein-like (LOC102597686) |
| AB | Down/Down | GO:0006950 | P | response to stress | 102,602,565 | XP_006361910.1 | low-temperature-induced_78_kDa_protein-like (LOC102602565) |
| AB | Down/Down | GO:0006950 | P | response to stress | 107,057,685 | XP_015160026.1 | abscisic_acid_and_environmental_stress-inducible_protein_TAS14-like (LOC107057685) |
| AB | Down/Down | GO:0009611 | P | response to wounding | 102,599,238 | NP_001305587.1 | (EE)-geranyllinalool_synthase(LOC102599238) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,578,969 | XP_006346594.1 | 26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,583,475 | XP_015170470.1 | heat_shock_70_kDa_protein_8(LOC102583475) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,584,371 | XP_006345019.1 | 22.7_kDa_class_IV_heat_shock_protein-like (LOC102584371) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,587,639 | XP_006338640.1 | 18.1_kDa_class_I_heat_shock_protein-like (LOC102587639) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,589,078 | XP_015170489.1 | 17.4_kDa_class_I_heat_shock_protein-like (LOC102589078) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,589,396 | XP_006360822.1 | 17.4_kDa_class_I_heat_shock_protein-like (LOC102589396) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,591,190 | XP_006342905.1 | 17.4_kDa_class_III_heat_shock_protein(LOC102591190) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,594,103 | XP_006346757.1 | 15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103) |
| AB | Down/Down | GO:0009408 | P | response to heat | 102,601,494 | XP_006349271.1 | 22.7_kDa_class_IV_heat_shock_protein-like (LOC102601494) |
| A | Down | GO:0009416 | P | response to light stimulus | 102,600,485 | XP_015164872.1 | protein_LIGHT-DEPENDENT_SHORT_HYPOCOTYLS_10-like (LOC102600485) |
| AB | Down/Down | GO:0009644 | P | response to high light intensity | 102,583,475 | XP_015170470.1 | heat_shock_70_kDa_protein_8(LOC102583475) |
| AB | Down/Down | GO:0043617 | P | cellular response to sucrose starvation | 102,577,576 | XP_006344055.1 | asparagine_synthetase_[glutamine-hydrolyzing](LOC102577576) |
