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Table 3 List of the differentially expressed genes in mock-ATL07 within the most enriched GO terms, which were related to oxidative pathways and stress responses. Highlighted as A are the genes that were differentially expressed in the mock-treated ATL07 plants, AB are the genes that were differentially expressed in both ATL07 mock and ATLWT PVY-inoculated plants

From: Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato

Related to oxidative pathway
A: ATL07mock B:ATLWT PVY Response Go Term Category Description GeneID ProteinID Annotation
 AB Down/Down GO:0006979 P response to oxidative stress 102,578,720 XP_015170961.1 L-ascorbate_peroxidase_cytosolic(LOC102578720)
 AB Down/Down GO:0006979 P response to oxidative stress 102,594,742 XP_015162428.1 uncharacterized (LOC102594742)
 AB Down/Down GO:0006979 P response to oxidative stress 102,596,945 XP_006341175.1 uncharacterized (LOC102596945)
 AB Down/Down GO:0042542 P response to hydrogen peroxide 102,578,969 XP_006346594.1 26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969)
 AB Down/Down GO:0042542 P response to hydrogen peroxide 102,583,475 XP_015170470.1 heat_shock_70_kDa_protein_8(LOC102583475)
 AB Down/Down GO:0042542 P response to hydrogen peroxide 102,591,190 XP_006342905.1 17.4_kDa_class_III_heat_shock_protein(LOC102591190)
 AB Down/Down GO:0000302 P response to reactive oxygen species 102,594,103 XP_006346757.1 15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103)
 AB Down/Down GO:0000304 P response to singlet oxygen 102,599,238 NP_001305587.1 (EE)-geranyllinalool_synthase(LOC102599238)
 A Up GO:0016491 F oxidoreductase activity 102,581,622 XP_006345577.1 delta(8)-fatty-acid_desaturase-like (LOC102581622)
 A Up GO:0016491 F oxidoreductase activity 102,581,792 XP_006357900.1 gibberellin_20_oxidase_1(LOC102581792)
 A Up GO:0016491 F oxidoreductase activity 102,581,872 XP_006350059.1 protein_ECERIFERUM_3-like (LOC102581872)
 A Down GO:0016705 F oxidoreductase activity 102,597,820 XP_006363763.1 cytochrome_P450_CYP72A219-like (LOC102597820)
 A Down GO:0016705 F oxidoreductase activity 102,604,056 XP_006367342.1 cytochrome_P450_83B1-like (LOC102604056)
 A Up GO:0055114 F oxidative -reduction process 102,592,722 XP_006358835.1 cytochrome_b561_and_DOMON_domain-containing_protein_At3g25290-like (LOC102592722)
 AB Up/Up GO:0016709 F oxidoreductase activity 102,598,017 XP_006362126.1 cytochrome_P450_78A6-like (LOC102598017)
 A Down GO:00055114 F oxidative -reduction process 102,579,798 XP_006358956.1 homogentisate_12-dioxygenase (LOC102579798)
 A Up GO:0016705 F oxidoreductase activity 102,603,519 XP_006350395.1 premnaspirodiene_oxygenase-like (LOC102603519)
 A Up GO:0016705 F oxidoreductase activity 102,603,857 NP_001305614.1 premnaspirodiene_oxygenase(LOC102603857)
 A Up GO:0016705 F oxidoreductase activity 102,577,568 NP_001275219.1 CYP86A33_fatty_acid_omega-hydroxylase (LOC102577568)
Related to stress response
 AB Down/Down GO:0006950 P response to stress 102,596,667 XP_015166769.1 low-temperature-induced_65_kDa_protein-like (LOC102596667)
 AB Down/Down GO:0006950 P response to stress 102,597,686 XP_015160032.1 late_embryogenesis_abundant_protein-like (LOC102597686)
 AB Down/Down GO:0006950 P response to stress 102,602,565 XP_006361910.1 low-temperature-induced_78_kDa_protein-like (LOC102602565)
 AB Down/Down GO:0006950 P response to stress 107,057,685 XP_015160026.1 abscisic_acid_and_environmental_stress-inducible_protein_TAS14-like (LOC107057685)
 AB Down/Down GO:0009611 P response to wounding 102,599,238 NP_001305587.1 (EE)-geranyllinalool_synthase(LOC102599238)
 AB Down/Down GO:0009408 P response to heat 102,578,969 XP_006346594.1 26.5_kDa_heat_shock_protein_mitochondrial(LOC102578969)
 AB Down/Down GO:0009408 P response to heat 102,583,475 XP_015170470.1 heat_shock_70_kDa_protein_8(LOC102583475)
 AB Down/Down GO:0009408 P response to heat 102,584,371 XP_006345019.1 22.7_kDa_class_IV_heat_shock_protein-like (LOC102584371)
 AB Down/Down GO:0009408 P response to heat 102,587,639 XP_006338640.1 18.1_kDa_class_I_heat_shock_protein-like (LOC102587639)
 AB Down/Down GO:0009408 P response to heat 102,589,078 XP_015170489.1 17.4_kDa_class_I_heat_shock_protein-like (LOC102589078)
 AB Down/Down GO:0009408 P response to heat 102,589,396 XP_006360822.1 17.4_kDa_class_I_heat_shock_protein-like (LOC102589396)
 AB Down/Down GO:0009408 P response to heat 102,591,190 XP_006342905.1 17.4_kDa_class_III_heat_shock_protein(LOC102591190)
 AB Down/Down GO:0009408 P response to heat 102,594,103 XP_006346757.1 15.7_kDa_heat_shock_protein_peroxisomal(LOC102594103)
 AB Down/Down GO:0009408 P response to heat 102,601,494 XP_006349271.1 22.7_kDa_class_IV_heat_shock_protein-like (LOC102601494)
 A Down GO:0009416 P response to light stimulus 102,600,485 XP_015164872.1 protein_LIGHT-DEPENDENT_SHORT_HYPOCOTYLS_10-like (LOC102600485)
 AB Down/Down GO:0009644 P response to high light intensity 102,583,475 XP_015170470.1 heat_shock_70_kDa_protein_8(LOC102583475)
 AB Down/Down GO:0043617 P cellular response to sucrose starvation 102,577,576 XP_006344055.1 asparagine_synthetase_[glutamine-hydrolyzing](LOC102577576)