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Table 4 PR gene family response (DEGs) to six biotic stressesa

From: Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid

 

Percent of response attributed to a PR gene familyb

PR Gene Family

whiteflies

mealybugs

bacteria

fungi

virus (CMV)

virus (CBSV)

Percent of PR gene family responsive to one or more stresses

1

7

20

7

25

1

10

4

2

15

0

14

0

11

10

13

3

8

0

7

13

2

10

6

4

1

0

2

0

1

2

1

5

10

60

11

13

9

5

10

6

0

0

0

0

1

0

0

7

17

0

9

13

17

7

16

8

3

0

7

0

2

0

3

9

17

0

23

38

35

33

26

10

9

0

7

0

4

5

6

11

1

0

0

0

0

2

1

14

3

20

7

0

7

10

5

15/16

5

0

5

0

10

5

8

17

3

0

2

0

0

2

1

# of PR DEGs

92

5

44

8

135

42

326

  1. aFor identities PR genes differentially expressed during the biotic stresses, see Additional file 11. For study information, see Methods
  2. bPercents are rounded to the nearest integer