Table 1 Assembly statistics of novel sequences included on this study (Illumina and PacBio). Metadata for all isolates used in the study can be found on Supplementary Table 1
From: Impacts of local population history and ecology on the evolution of a globally dispersed pathogen
Subspecies | Geographic origin | Isolate | Host plant | N50 (kb) | Read length (bp) | Genome length (bp) | Coverage (x) |
|---|---|---|---|---|---|---|---|
X. fastidiosa subsp. fastidiosa | Costa Rica | XF68 | Psidium spp. | 80.121 | 178 | 2,714,514 | 117 |
XF70 | Coffea spp. | 94.869 | 246 | 2,594,259 | 667 | ||
XF71 | Coffea spp. | 95.502 | 184 | 2,637,686 | 59 | ||
XF72 | Coffea spp. | 92.044 | 194 | 2,582,644 | 84 | ||
XF73 | Coffea spp. | 100.56 | 181 | 2,606,440 | 140 | ||
XF74 | Coffea spp. | 96.048 | 190 | 2,522,713 | 133 | ||
XF75 | Coffea spp. | 86.72 | 189 | 2,624,678 | 146 | ||
XF1090 | Coffea spp. | 88.998 | 147 | 2,673,407 | 142 | ||
XF1093 | Coffea spp. | 87.187 | 149 | 2,643,654 | 119 | ||
XF1094 | Vinca spp. | 104.842 | 148 | 2,634,626 | 111 | ||
XF1105 | Coffea spp. | 97.706 | 148 | 2,603,724 | 168 | ||
XF1110 | Vinca spp. | 80.632 | 147 | 2,605,605 | 136 | ||
X. fastidiosa subsp. pauca | Brazil | RAAR15 co33 | Coffea spp. | 145.445 | 90 | 2,667,270 | 714 |
RAAR16 co13 | Coffea spp. | 98.264 | 90 | 2,740,681 | 663 | ||
RAAR17 ciUb7 | Citrus sinensis | 114.674 | 90 | 2,681,548 | 659 |