Table 4 Type and number of repetitive genomic elements
Order | Superfamily | Total | Cumulative length (Mb) | Cumulative length (bp) | % Genome |
|---|---|---|---|---|---|
DNA | Unclassified | 290 | 0.075844 | 75,844 | 0.02758 |
CMC-Chapaev-3 | 63 | 0.007718 | 7718 | 0.00281 | |
Crypton | 1 | 0.000084 | 84 | 0.00003 | |
Crypton-V | 188 | 0.045662 | 45,662 | 0.01660 | |
hAT | 114 | 0.017705 | 17,705 | 0.00644 | |
hAT-Ac | 1896 | 0.706924 | 706,924 | 0.25706 | |
hAT-Blackjack | 107 | 0.019388 | 19,388 | 0.00705 | |
hAT-Charlie | 1533 | 0.422873 | 422,873 | 0.15377 | |
hAT-Tip100 | 99 | 0.021175 | 21,175 | 0.00770 | |
Kolobok-Hydra | 2433 | 1.172149 | 1,172,149 | 0.42624 | |
Kolobok-T2 | 44 | 0.012426 | 12,426 | 0.00452 | |
Maverick | 145 | 0.07668 | 76,680 | 0.02788 | |
Merlin | 423 | 0.051174 | 51,174 | 0.01861 | |
MuLE-MuDR | 57 | 0.011788 | 11,788 | 0.00429 | |
PIF-Harbinger | 262 | 0.077291 | 77,291 | 0.02811 | |
PIF-Spy | 127 | 0.017818 | 17,818 | 0.00648 | |
PiggyBac | 3472 | 0.688623 | 688,623 | 0.25041 | |
Sola-1 | 143 | 0.036072 | 36,072 | 0.01312 | |
TcMar-Fot1 | 241 | 0.081897 | 81,897 | 0.02978 | |
TcMar-ISRm11 | 479 | 0.110088 | 110,088 | 0.04003 | |
TcMar-Mariner | 3520 | 0.808834 | 808,834 | 0.29412 | |
TcMar-Pogo | 43 | 0.00506 | 5060 | 0.00184 | |
TcMar-Stowaway | 67 | 0.015985 | 15,985 | 0.00581 | |
TcMar-Tc1 | 21,131 | 5.625815 | 56,25,815 | 2.04575 | |
TcMar-Tc4 | 2991 | 0.61903 | 619,030 | 0.22510 | |
TcMar-Tigger | 640 | 0.128285 | 128,285 | 0.04665 | |
LINE | CR1 | 161 | 0.04403 | 44,030 | 0.01601 |
I | 2503 | 0.977458 | 977,458 | 0.35544 | |
I-Jockey | 951 | 0.715998 | 715,998 | 0.26036 | |
L1 | 38 | 0.012373 | 12,373 | 0.00450 | |
R1 | 262 | 0.104838 | 104,838 | 0.03812 | |
R1-LOA | 40 | 0.008446 | 8446 | 0.00307 | |
R2-NeSL | 64 | 0.027806 | 27,806 | 0.01011 | |
RTE-X | 522 | 0.20592 | 20,5920 | 0.07488 | |
LTR | Unclassified | 40 | 0.002817 | 2817 | 0.00102 |
Copia | 35 | 0.026156 | 26,156 | 0.00951 | |
ERV1 | 285 | 0.024605 | 24,605 | 0.00895 | |
ERVK | 2 | 0.000117 | 117 | 0.00004 | |
ERVL | 21 | 0.00166 | 1660 | 0.00060 | |
Gypsy | 679 | 0.193441 | 193,441 | 0.07034 | |
RC | Helitron | 324 | 0.123596 | 123,596 | 0.04494 |
Retroposon | SVA | 1 | 0.000144 | 144 | 0.00005 |
Satellite | Unclassified | 720 | 0.371618 | 371,618 | 0.13513 |
acro | 127 | 0.009609 | 9609 | 0.00349 | |
Simple_repeat | Unclassified | 437 | 0.044859 | 44,859 | 0.01631 |
SINE | rRNA | 129 | 0.031216 | 31,216 | 0.01135 |
snRNA | 149 | 0.021057 | 21,057 | 0.00766 | |
srpRNA | Unclassified | 1 | 0.000289 | 289 | 0.00011 |
tRNA | Unclassified | 191 | 0.01394 | 13,940 | 0.00507 |
Unknown | Unclassified | 121,180 | 25.279287 | 25,279,287 | 9.19247 |
Total | 169,371 | 39.097668 | 14.21733 |