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Fig. 5 | BMC Genomics

Fig. 5

From: Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)

Fig. 5

Nucleotide diversity at cis-eQTL. a Nucleotide diversity (π) for the most significant SNP for each cis-eQTL. The distribution of π is pictured fro each subspecies and each eQTL type. b Distribution of π for 100 Kb windows around the most significant SNP for each cis-eQTL. Genome-wide (GW) π was determined by randomly selecting X SNPs that were more than 100 kb from a cis-eQTL and low diversity SNPs (MAF <0.1 in both subspecies) were removed prior to analyses. Asterisks indicate a significant differences determined via Tukey’s test between eQTL types (p<1×10−8)

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