Table 7 Simple sequence repeats in the chloroplast genome of B. prionitis
cpSSR ID | Repeat Motif | Length (bp) | No. of Repeats | SSR start position |
|---|---|---|---|---|
1 | (A)8 | 8 | 22 | 4, 148; 11, 237; 15,924; 18,270 (rpoC2); 21,932 (rpoC1); 22,378; 44,464; 46,615; 59,100; 62,380 (petA); 64,357 (psbF); 68,879; 70,310; 70,923; 74,985; 96,279; 110,695 (ndhF); 113,108 (ccsA); 115,491 (ndhD); 123,247 (ycf1); 124,939 (ycf1); 126,594 (ycf1) |
2 | (A)9 | 9 | 8 | 3363 (matK); 89, 137 (ycf2); 28,351; 30,176; 68,148; 89,137 (ycf2); 112,433; 133,945 |
3 | (A)10 | 10 | 3 | 6496; 70,448; 115,641 |
4 | (G)8 | 8 | 1 | 58, 275 (accD) |
5 | (T)8 | 8 | 21 | 9447; 9599; 9655; 30,954; 35,949; 46,646; 46,783; 59,282; 59,842 (ycf4); 68,159; 70,217; 70,286; 73,675; 76,792 (pet D); 83,687 (rps19); 109,738 (ndhF); 112,390; 113,446 (ccsA); 114,650 (ndhD); 124,356 (ycf1); 139,668 |
6 | (T)9 | 9 | 16 | 7179 (psbK); 12,618; 13,606; 16,227 (rpoC2); 35,155; 45,651; 54,687; 65,875; 67,203; 83,719 (rps19); 102,001; 122,650 (ycf1); 123,040 (ycf1); 124,647 (ycf1); 124,977 (ycf1); 146,809 (ycf2) |
7 | (T)10 | 10 | 3 | 42,062; 54,268 (atpB); 77,754 (rpoA) |
8 | (T)11 | 11 | 4 | 18,127 (rpoC2); 29,006; 43,047; 50,631 |
9 | (T)12 | 12 | 2 | 7567; 11,941; |
10 | (T)13 | 13 | 1 | 81,706 |
11 | (T(16) | 16 | 1 | 30,034 |
12 | (AT)5 | 5 | 1 | 19,500 (rpoC2) |
13 | (TA)5 | 5 | 4 | 45,796; 45,807; 45,823; 58,964 |
14 | (ATA)4 | 4 | 1 | 54,322 |
15 | (TTC)4 | 4 | 1 | 34,936 (psbC) |
16 | (AAAC)1 | 1 | 1 | 67,703 |
17 | (AATA)1 | 1 | 1 | 114,259 (ndhD) |
18 | (AATC)1 | 1 | 1 | 121,984 |
19 | (AGAA)1 | 1 | 1 | 9020 |
20 | (ATAA)1 | 1 | 1 | 54,335 |
21 | (GAAA)1 | 1 | 1 | 60,503 |
22 | (GATT)1 | 1 | 1 | 5638 |
23 | (AATGGA)1 | 1 | 1 | 99,217 |
24 | (TTTCCA)1 | 1 | 1 | 136,718 |