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Table 7 Simple sequence repeats in the chloroplast genome of B. prionitis

From: Complete chloroplast genome sequence of Barleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae

cpSSR ID Repeat Motif Length (bp) No. of Repeats SSR start position
1 (A)8 8 22 4, 148; 11, 237; 15,924; 18,270 (rpoC2); 21,932 (rpoC1); 22,378; 44,464; 46,615; 59,100; 62,380 (petA); 64,357 (psbF); 68,879; 70,310; 70,923; 74,985; 96,279; 110,695 (ndhF); 113,108 (ccsA); 115,491 (ndhD); 123,247 (ycf1); 124,939 (ycf1); 126,594 (ycf1)
2 (A)9 9 8 3363 (matK); 89, 137 (ycf2); 28,351; 30,176; 68,148; 89,137 (ycf2); 112,433; 133,945
3 (A)10 10 3 6496; 70,448; 115,641
4 (G)8 8 1 58, 275 (accD)
5 (T)8 8 21 9447; 9599; 9655; 30,954; 35,949; 46,646; 46,783; 59,282; 59,842 (ycf4); 68,159; 70,217; 70,286; 73,675; 76,792 (pet D); 83,687 (rps19); 109,738 (ndhF); 112,390; 113,446 (ccsA); 114,650 (ndhD); 124,356 (ycf1); 139,668
6 (T)9 9 16 7179 (psbK); 12,618; 13,606; 16,227 (rpoC2); 35,155; 45,651; 54,687; 65,875; 67,203; 83,719 (rps19); 102,001; 122,650 (ycf1); 123,040 (ycf1); 124,647 (ycf1); 124,977 (ycf1); 146,809 (ycf2)
7 (T)10 10 3 42,062; 54,268 (atpB); 77,754 (rpoA)
8 (T)11 11 4 18,127 (rpoC2); 29,006; 43,047; 50,631
9 (T)12 12 2 7567; 11,941;
10 (T)13 13 1 81,706
11 (T(16) 16 1 30,034
12 (AT)5 5 1 19,500 (rpoC2)
13 (TA)5 5 4 45,796; 45,807; 45,823; 58,964
14 (ATA)4 4 1 54,322
15 (TTC)4 4 1 34,936 (psbC)
16 (AAAC)1 1 1 67,703
17 (AATA)1 1 1 114,259 (ndhD)
18 (AATC)1 1 1 121,984
19 (AGAA)1 1 1 9020
20 (ATAA)1 1 1 54,335
21 (GAAA)1 1 1 60,503
22 (GATT)1 1 1 5638
23 (AATGGA)1 1 1 99,217
24 (TTTCCA)1 1 1 136,718