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Table 4 Pattern of homozygous and heterozygous SNPs

From: Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset

SNP pattern

 

Homo SNPs

Hetero SNPs

Total SNPs

Transition

A/G

5315

45,067

50,382

T/C

5768

44,871

50,639

G/A

4701

47,543

52,244

C/T

4908

47,160

52,068

total(Ts)

20,692

184,641

205,333

Transversion

A/C

2329

12,114

14,443

A/T

2327

11,999

14,326

T/A

2310

12,199

14,509

T/G

2274

12,193

14,467

G/C

2509

6589

9098

G/T

3020

11,576

14,596

C/A

3104

11,522

14,626

C/G

2306

6660

8966

total(Tv)

20,179

84,852

105,031

Ts/Tv

1.03

2.18

1.95