Table 3 CRISPR spacers targeting Campylobacter phage DA10
From: Campylobacter bacteriophage DA10: an excised temperate bacteriophage targeted by CRISPR-cas
Host (Acc. No.) | CRISPR spacer sequence (ID) | DA10 target |
|---|---|---|
C. coli BP3183 (CP017871) | CACGTGTGGGAAGGAGAACCTTTAGAGTATAA (32/32) | DA10_ORF01 |
C. jejuni HSA43 (KR155141) | CCTTTGTCAATTTATGAAAAATTATGTTTCAA (32/32) | DA10_ORF02 |
C. jejuni HCC31 (KR155133) | AAATTTACAGCACAAAATAAAGATTTTAATATT (33/33) | DA10_ORF03 |
– | No matches | DA10_ORF04 |
– | No matches | DA10_ORF05 |
C. jejuni F041 (EF017333) | TAGATTTAGAAACTTTTAATAAAGTAAAAGA (31/31) | DA10_ORF06 |
– | No matches | DA10_ORF07 |
C. jejuni R17 (HQ378296) | ATAATCCTAGCGAGGAAAGCAAAACTGATGATG (33/33) | DA10_ORF08 |
C. coli YH503 (CP025281) | TGGTTGCTTCGTTCAATCAAAAACAGGTGC (30/30) | DA10_ORF09 |
C. jejuni NCTC 13268 (LR134497) | AGTGCTACAGCCTTTACCACACTTCAATC (29/29) | DA10_ORF10 |
C. hyointestinalis LMG9260 (CP015575) | TTCAAAAGATGA-TTTTGATTTACTTTGCAAATCTT (32/36) | DA10_ORF11 |
C. coli RM4661 (CP007181) | ACCCTGAGTTTAAAGACTTAAGTAAATGTAA (31/31) | DA10_ORF12 |
C. jejuni YH003 (CP041584) | AGGGGTGATATTGTTATGAGTATTATGCAA (30/30) | DA10_ORF13 |
C. jejuni F087 (EF017335) | TTAATCCTAGTGAAATTGCAAAATTAACAAG (31/31) | DA10_ORF14 |
C. jejuni HCC01 (KR155140) | GTTAAAATCTTTCGAAACAATAGAATATTTA (30/31) | DA10_ORF15 |
C. jejuni HCC92 (KR155175) | GAAAATGGATATTTTTATGCAGTTAGCGGGGTT (33/33) | DA10_ORF16 |
C. jejuni HSA25 (KR155156) | GTGGCTAATAATAATAAAGCTAAGACTGATA (31/31) | DA10_ORF17 |
C. coli 210 (KR155130) | TGTAGCTGGTAAGGTTATAAGAGGTTTATT (30/30) | DA10_ORF18 |
C. jejuni ATCC 33560 (CP019838) | TTAGTGCTTTATTTGAAAATGAGATGGCAG (30/30) | DA10_ORF19 |
C. coli RM4661 (CP007181) | TTTTCTTATGAAGTTTTTAAAGGAATTATAC (31/31) GCTTTAGGAAATGCTTTAAAACGCTTTGG (29/29) | DA10_ORF20 |
C. jejuni HCC01 (KR155140) | TATAAAAATATGAAAATAGTATCTTACGCA (30/30) | DA10_ORF21 |
– | No matches | DA10_ORF22 |
C. coli 14983A (CP017025) | ATGGAGAAGAGATAAATAAACAAGTTTTAAGC (32/32) | DA10_ORF23 |
C. coli BP3183 (CP017871) | TCTTATAAACAAAGCGGTAATGAAGGCTTA (30/30) | DA10_ORF24 |
C. jejuni GB1 (HQ378304) | TGGTATGAGTTAGCAACTTATAATAACTCTAATGTTATTA (37/40) | DA10_ORF25 |
C. jejuni F280 (EF017337) | ATTTTGGAAGTACTGCTAGAAATGCAAGTTTTA (33/33) | DA10_ORF26 |
C. coli YH502 (CP018900) | TAGATAACGAGTTATATTCAGAAATACCAAA (31/31) | DA10_ORF27 |
C. jejuni FORC_046 (CP017229) | TGCAGAAAATGGAGATAGACAAGATTTTCCTGT (33/33) | DA10_ORF28 |
C. jejuni 183 (KR155181) | TCAAAGTGCTGAAAAAGATAGAAACTTACTTA (32/32) | DA10_ORF29 |
– | No matches | DA10_ORF30 |
C. jejuni HCC60 (KR155155) | CCTTATAAAAGCGAATATTTCACTGCGTGCG-TTATAC (36/38) | DA10_ORF31 |
C. jejuni NCTC 12662 (CP019965) | CCATCAAGTCGTGCAATTTTAATACACTGGG (30/31) | DA10_ORF32 |
C. jejuni NCTC 11168 (LS483362) | AGTTAAATTCAACTAATGAAACTTTGGAAAA (31/31) | DA10_ORF33 |
C. jejuni CJ066CC508 (CP0122224) | GTTATACTTACACCCTTTAAAAACTAATGG (30/30) | DA10_ORF34 |
C. jejuni YH003 (CP041584) | CTTTATGTAATTTTTATAATCAAAGTATAA (30/30) | DA10_ORF35 |
C. jejuni GB1 (HQ378304) | TCTACAAGAATGAGGATGATGATATTTTACAA (32/32) | DA10_ORF36 |
– | No matches | DA10_ORF37 |
C. jejuni NCTC 12660 (CP028910) | AGATGCTTTAACAGTATGTTCTTTAGCGGG (29/30) | DA10_ORF38 |
C. jejuni HCC04 (KR155185) | CCAAAACAATAGCAAATTTTAAATATTATATA (32/32) | DA10_ORF39 |
C. jejuni R133 (HQ378258) | ATGAGTAAAAAAGATAGTCAAGAATGGT (28/28) | DA10_ORF40 |
C. jejuni F007 (EF017341) | AAAAGAGCCTTTAGAAAACAATGTTTTTATAATA (31/34) | DA10_ORF41 |
C. coli RM4661 (CP007181) | ATAATTCCTAATAAAAAAGTAAGTTTTGATG (31/31) | DA10_ORF42 |
C. jejuni F459 (EF017334) | AAA-TAGTTTATAAAAATAAGCAAGATGTAGA (31/32) | DA10_ORF43 |
C. jejuni F226 (EF017339) | TTATTATGATGATAACTTAAATAAGTTTATC (31/31) | DA10_ORF44 |
– | No matches | DA10_ORF45 |
– | No matches | DA10_ORF46 |
– | No matches | DA10_ORF47 |
– | No matches | DA10_ORF48 |
C. jejuni NCTC 12660 (CP028910) | TTTAAATTTCAAAGATGAGAATATAGCTAA (30/30) | DA10_ORF49 |
– | No matches | DA10_ORF50 |
– | No matches | DA10_ORF51 |
C. jejuni NCTC 13257 (LR134502) | TAAAATAATTTGCAAGGTATATAAAAAATTTGATTTTG (37/38) | DA10_ORF52 |
– | No matches | DA10_ORF53 |
– | No matches | DA10_ORF54 |
C. jejuni R15 (HQ378302) | TTAAAAATAGAAATTTTATAGGTTGCGAAA (30/30) | DA10_ORF55 |
C. jejuni 80 (KR155173) | AAA-AGAAACTATATTAGCAGGTATAAATAATCT (33/34) | DA10_ORF56 |
– | No matches | DA10_ORF57 |
C. jejuni NCTC 12664 (CP028912) | GTGGCTAAGAATAAAATAAGAAACACTGGT (29/30) | DA10_ORF58 |
– | No matches | DA10_ORF59 |