Fig. 3
Collinearity of reassembled G. arboreum chromosome (A_A12) with 26 chromosomes of G. hirsutum. Collinear relationship of reassembled G. arboreum chromosome (A_A12) with 26 chromosomes of G. hirsutum was determined by MCScan. After masking the repeat regions, collinearity analysis of G. arboreum chromosome A_A12 was carried out with all 26 chromosomes of G. hirsutum. Results indicated good collinear relationship of reassembled G. arboreum chromosome A_A12 with its corresponding homologous chromosomes 12 (AD_A12 and AD_D12) of G. hirsutum as compare to others chromosomes. G. arboreum chromosome 12 was shown by ‘A_A12’ while, chromosomes belong to At and Dt sub-genomes of G. hirsutum were indicated by ‘AD_A’ and ‘AD_D’