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Table 1 Statistics of sequencing reads

From: Transcriptome analysis of the brain provides insights into the regulatory mechanism for Coilia nasus migration

Samples

C1a

C2a

C3a

S1a

S2a

S3a

Raw reads

46,644,438

46,486,085

46,608,652

46,401,430

46,355,046

46,667,900

RIN

9.3

9.1

9.6

9.7

9.7

9.4

Clean reads

46,544,340

46,390,980

46,502,440

46,328,580

46,266,780

46,570,300

Q30

92.43%

91.61%

92.28%

92.70%

92.59%

92.31%

(G + C) content

47.00%

47.50%

47.00%

47.00%

48.00%

47.50%

Clean ratiob

99.79%

99.8%

99.79%

99.84%

99.81%

99.8%

  1. aC1-C3 refers to three replicated groups of the control group, S1-S3 refers to three replicated groups of the stressed group
  2. bClean ratio equals clean reads/raw reads
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BMC Genomics

ISSN: 1471-2164

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