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Table 1 Summary of Sophora alopecuroides sequences analyzed

From: De novo transcriptome sequencing and analysis of salt-, alkali-, and drought-responsive genes in Sophora alopecuroides

Sample

Raw Reads

Clean reads

Clean bases

Error (%)

Q20 (%)

Q30 (%)

GC (%)

CK_1

47,691,636

46,202,320

6.93G

0.01

97.79

94.15

44.01

CK_2

41,826,612

40,474,310

6.07G

0.01

97.90

94.42

43.73

CK_3

50,190,638

49,125,200

7.37G

0.01

97.61

93.93

43.91

ST_1

46,150,030

44,279,092

6.64G

0.01

97.32

93.51

43.22

ST_2

50,369,242

48,508,750

7.28G

0.01

97.82

94.37

43.51

ST_3

54,517,670

52,656,970

7.90G

0.01

97.85

94.40

43.48

A_ST_1

48,586,426

47,023,258

7.05G

0.01

97.67

93.94

46.67

A_ST_2

58,315,134

56,447,032

8.47G

0.01

97.63

93.90

46.23

A_ST_3

53,214,668

51,438,942

7.72G

0.01

97.54

93.68

44.09

DT_1

57,566,808

55,738,546

8.36G

0.01

97.76

94.20

43.46

DT_2

49,791,136

48,134,912

7.22G

0.01

97.91

94.42

43.59

DT_3

47,580,814

46,160,236

6.92G

0.01

97.92

94.42

43.62

Summary

605,800,814

586,189,568

87.93G

    
  1. The numbers 1–3 after CK, ST and A_ST, and DT identify the three independent biological replicates for the control and salt, alkali, and drought treatments, respectively
  2. Q20: The percentage of bases with a Phred value > 20
  3. Q30: The percentage of bases with a Phred value > 30