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Table 2 Genetic diversity statistics of Vibrionaceae clades isolated from Poza Rojas, CCB

From: Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation

Clade

Number of individuals

Number of segregating sites

π

θw

Tajima’s D

P-value of Tajima’s D

Clade I

 

3

100,971

0.0164894

0.0163978

0

0

Clade II

All individuals

22

103,197

0.01148342

0.01106029

0.15738106

0.8582025

All individuals in the three larger sub-Clades

14

49,946

0.00916203

0.00613614

2.23866585

0.02142617

Sub-clade G

4

13

2.54E-06

2.77E-06

−0.84306779

0.77323024

Sub-clade D

6

42

5.47E-06

7.19E-06

−1.52560731

0.02458297

Sub-clade A

4

82

1.61E-05

1.75E-05

−0.83190864

0.8020116

Clade III

 

5

40,593

0.0051088

0.0061293

−1.27467187

0.01772241

Clade IV

 

5

209

2.86E-05

3.46E-05

−1.31696234

0

Clade V

 

4

34,843

0.00398639

0.00434715

−0.87361739

0.56601856

Clade VI

 

3

204,388

0.04622002

0.04621538

0

0

  1. From left to right are displayed the values for segregation sites, nucleotide diversity (π) Watterson’s theta (θw), Tajima’s D and Tajima’s D p-value. The values were estimated for all six Clades and Sub-clades with 3 or more individuals
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BMC Genomics

ISSN: 1471-2164

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