Table 3 Estimates of effective population sizes (Ne) of Vibrionaceae clades isolated from Poza Rojas, CCB, obtained through simulations with Fastsimcoal2 [44, 45], and comparative values from other organisms
Group Clade | Sample size | Median Value | Range | Environment | Reference | |
|---|---|---|---|---|---|---|
Lower value | Larger value | |||||
Clade I | 3 | 12,822,270 | 10,110,043 | 16,231,765 | Sediment | This work |
Clade II | ||||||
Sub-clade A | 4 | 55,938 | 34,079 | 392,104 | Sediment | This work |
Sub-clade D | 6 | 20,849 | 2795 | 218,603 | Water-Sediment | This work |
Sub-clade G | 4 | 29,791 | 6174 | 226,658 | Water-Sediment | This work |
Clade III | 4 | 15,018,880 | 8,970,283 | 22,432,331 | Water-Sediment | This work |
Clade IV | 4 | 383,067 | 345,564 | 427,557 | Sediment | This work |
Clade V | 4 | 9,594,874 | 5,894,074 | 12,914,770 | Sediment | This work |
Clade VI | 3 | 4,141,870 | 2,582,483 | 10,645,019 | Sediment | This work |
H. pylori | 39,665,437 | – | – | – | [46] | |
S. enterica | 348,991,354 | – | – | – | [46] | |
E. coli | 179,600,000 | – | – | – | [46] | |
H. sapiens | 20,348 | – | – | – | [46] | |
A. thaliana | 266,769 | – | – | – | [47] | |
C. elegans | 3,998,701 | – | – | – | [48] | |
T. brucei | 5,332,244 | – | – | – | [46] | |