Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Genomic nucleotide-based distance analysis for delimiting old world monkey derived herpes simplex virus species

Fig. 3

Core herpes B phylogeny and clades. A genome sequence alignment was generated with the core herpes B strains identified in Fig. 1. A phylogenetic network using the HKY + G + I substitution model (gaps deleted; p-inv = 0.686; gamma = 0.927) (a) and maximum likelihood tree (b) were then produced, finding three provisional clades. Pairwise distances between the strains were plotted (shown in Figure c) and a clade cutoff value (vertical dotted line) was calculated (0.0203%). Figure d contains a table showing the between group genetic distances

Back to article page