Table 2 Basic statistics in addition to the assembly quality metrics for the studied D. solani genomes
Genome | No. of scaffolds | No. of N bases | Genome size (bp) | Largest contig (bp) | N50 | L50 | %GC | Genbank accession no. | Reference |
|---|---|---|---|---|---|---|---|---|---|
IFB0167 | 1 | 0 | 4,922,289 | 4,922,289 | 4,922,289 | 1 | 56.25 | CP051457 | This study |
IFB0212 | 2 | 0 | 4,909,935 | 3,946,010 | 3,946,010 | 1 | 56.25 | JABAON000000000 | This study |
IFB0231 | 1 | 0 | 4,924,702 | 4,924,702 | 4,924,702 | 1 | 56.24 | CP051458 | This study |
IFB0311 | 3 | 0 | 4,913,261 | 2,394,283 | 1,850,246 | 2 | 56.24 | JABAOO000000000 | This study |
IFB0417 | 1 | 0 | 4,924,102 | 4,924,102 | 4,924,102 | 1 | 56.24 | CP051459 | This study |
IFB0421 | 1 | 0 | 4,934,537 | 4,934,537 | 4,934,537 | 1 | 56.24 | CP051460 | This study |
IFB0487 | 4 | 0 | 4,882,124 | 3,440,832 | 3,440,832 | 1 | 56.23 | JABAOP000000000 | This study |
IFB0695 | 7 | 0 | 4,904,769 | 2,442,930 | 755,734 | 2 | 56.25 | JABAOQ000000000 | This study |
IFB0099 | 1 | 0 | 4,932,920 | 4,932,920 | 4,932,920 | 1 | 56.24 | CP024711 | |
IFB0158 | 37 | 395 | 4,879,070 | 772,123 | 360,663 | 5 | 56.24 | PENA00000000 | [31] |
IFB0221 | 38 | 394 | 4,878,255 | 774,432 | 360,663 | 5 | 56.24 | PEMZ00000000 | [31] |
IFB0223 | 1 | 0 | 4,937,554 | 4,937,554 | 4,937,554 | 1 | 56.24 | CP024710 | [31] |
IPO 2222 | 1 | 9200 | 4,867,258 | 4,867,258 | 4,867,258 | 1 | 56.22 | AONU01000000 | [44] |
GBBC 2040 | 1 | 27,548 | 4,860,047 | 4,860,047 | 4,860,047 | 1 | 56.34 | AONX01000000 | [44] |
MK10 | 3 | 3800 | 4,935,237 | 4,934,019 | 4,934,019 | 1 | 56.21 | AOOP01000000 | [44] |
MK16 | 3 | 2100 | 4,870,382 | 4,865,372 | 4,865,372 | 1 | 56.23 | AOOQ01000000 | [44] |
D s0432–1 | 4 | 0 | 4,904,518 | 2,278,175 | 1,562,114 | 2 | 56.20 | AMWE01000000 | [38] |
PPO 9019 | 24 | 30 | 4,866,823 | 1,553,733 | 485,395 | 3 | 56.25 | JWLS01000000 | [39] |
PPO 9134 | 22 | 187 | 4,870,830 | 1,553,748 | 485,873 | 3 | 56.24 | JWLT01000000 | [39] |
RNS 05.1.2A | 37 | 0 | 4,985,571 | 570,255 | 305,078 | 7 | 56.13 | JWMJ01000000 | [39] |
RNS 07.7.3B | 24 | 325 | 4,871,815 | 688,619 | 485,311 | 4 | 56.24 | JWLR01000000 | [39] |
RNS 08.23.3.1A | 1 | 12,124 | 4,923,743 | 4,923,743 | 4,923,743 | 1 | 56.25 | AMYI01000000 | [60] |