From: Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria
Species | Zymoseptoria tritici | Zymoseptoria pseudotritici | Zymoseptoria brevis | Zymoseptoria ardabiliae | Zymoseptoria passerinii | |
---|---|---|---|---|---|---|
Isolate | Zt05 | Zt10 | Zp13 | Zb87 | Za17 | Zpa63 |
Origin | Denmark | Iran, Ilam province | Iran, Ardabil province | Iran | Iran, Ardabil province | USA |
Host | Triticum aestivum | Triticum aestivum | Dactylis glomerata | Phalaris paradoxa | Lolium perenne | Hordeum vulgare |
Year (of isolation) | 2004 | 2001 | 2004 | Â | 2004 | Â |
Contig number | 30 | 19 | 42 | 29 | 50 | 103 |
Total length (bp) | 41,240,984 | 39,248,105 | 40,312,446 | 41,586,671 | 38,100,668 | 41,398,787 |
Mean contig size (bp) | 1,374,699 | 2,065,690 | 59,820 | 1,434,023 | 762,013 | 401,930 |
N50 | 2,454,671 | 2,925,395 | 2,115,121 | 2,744,794 | 1,156,695 | 737,698 |
L50 | 6 | 5 | 7 | 7 | 11 | 18 |
Contigs with telomeric repeats on both ends | 12 | 19 | 5 | 9 | 0 | 0 |
Complete BUSCO genes (%) | 98.4 | 98.7 | 98.5 | 97.0 | 98.2 | 97.5 |
Number of genes | 12,386 | 11,991 | 11,661 | 11,480 | 11,463 | 10,528 |
Repeat content (%) | 19.9 | 16.5 | 20.8 | 29.2 | 18.2 | 31.4 |
Percentage of non-core sequences compared to the IPO323 reference | 12.49 | 8.69 | 4.27 | 4.6 | 3.45 | 6.85 |
NCBIÂ Biosample | SAMN04494882 | SAMN02981321 | SAMN02981322 | SAMN03294124 | SAMN02981326 | SAMN02981330 |