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Table 2 SNPs in the chromosome 14 haplotype block from the combined TZL + MCT GWAS

From: Genome-wide association analysis of canine T zone lymphoma identifies link to hypothyroidism and a shared association with mast-cell tumors

SNP

Chr

BP

Alleles

Associated Allele Freq

R2 from top SNP

TZL + MCT GWAS

Conditional for Chr14

TZL

Ref

OR

P-value

OR

P-value

BICF2G630521558

14

11,695,969

C/T

0.78

0.59

0.62

1.19

1.09E-06

1.00

0.9482

BICF2G630521572

14

11,721,433

T/C

0.70

0.45

0.94

1.22

2.80E-08

0.99

0.7588

BICF2G630521606

14

11,733,161

T/C

0.78

0.58

0.61

1.19

6.84E-07

1.01

0.8209

BICF2G630521619

14

11,736,615

C/T

0.79

0.58

0.60

1.19

5.17E-07

1.01

0.7721

BICF2P867665

14

11,765,081

G/T

0.79

0.57

0.59

1.22

1.77E-08

1.03

0.3593

TIGRP2P186605

14

11,778,977

G/A

0.70

0.43

0.95

1.23

3.25E-09

1.00

0.9681

BICF2G630521678

14

11,791,385

A/G

0.70

0.44

0.99

1.23

2.21E-09

1.00

0.9637

BICF2G630521681

14

11,794,735

C/T

0.70

0.43

1.00

1.23

1.51E-09

1.00

1.0000

BICF2G630521696

14

11,807,161

G/A

0.71

0.44

0.98

1.23

1.79E-09

1.00

0.9863

  1. Only SNPs that are part of the nine-SNP haplotype block are shown. All SNPs that formed the chromosome 14 peak in the combined TZL + MCT GWAS are shown in Additional File 7. SNPs that were significant in the TZL only GWAS are bolded. The top SNP (BICF2G630521681) was the same for both analyses. Ref represents the combined TZUS and control reference group