Machine learning based imputation techniques for estimating phylogenetic trees from incomplete distance matrices

BMC Genomics

Table 1 RF rates of different methods on the 24 taxa dataset with varying numbers of missing entries. The best RF rates for various model conditions are shown in boldface

#Taxa	#Entries	#Missing	RF Rate
		Entries	DAMBE	LASSO	MF	AE
		10	0.0476	0.2857	0	0.0952
		20	0.1429	0.3333	0.1905	0.2381
		30	0.2381	0.3333	0.1905	0.2381
		40	0.2857	0.3333	0.2857	0.3333
		50	0.3333	0.1905	0.4286	0.3333
		60	0.2857	0.2381	0.3333	0.381
		70	0.4286	0.2857	0.5714	0.381
24	276	80	0.4762	0.381	0.6667	0.381
		90	0.5714	0.5238	0.5238	0.5238
		100	0.5714	0.5714	0.7143	0.6190
		110	0.7143	0.6190	0.8571	0.6190
		120	0.8095	0.7619	0.8571	0.7143
		130	0.8571	0.7619	0.8095	0.7619
		140	N/A	N/A	0.7619	0.7619

ISSN: 1471-2164