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Table 1 Description of the bisulfite sequencing (BS-Seq) data of early developing stems (3-month-old) in Populus trichocarpa

From: DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems

Sample

Raw reads

Clean reads

Sequence Depth

Mapped Reads

Mapped Rate (%)

PS

Rep1

105,344,898

105,190,862 (99.85%)

30.79

80,968,657

76.97

Rep2

99,553,450

99,425,308 (99.87%)

30.35

79,809,380

80.27

Rep3

107,558,146

107,425,046 (99.88%)

32.16

84,583,644

78.74

TS

Rep1

107,666,760

10,749,4930 (99.84%)

31.51

82,870,707

77.09

Rep2

109,561,376

109,409,538 (99.86%)

31.51

82,864,569

75.74

Rep3

115,622,622

115,474,758 (99.87%)

34.14

89,790,043

77.76

SS

Rep1

113,318,946

113,174,330 (99.87%)

34.29

90,186,749

79.69

Rep2

107,441,448

107,246,874 (99.82%)

32.09

84,393,945

78.69

Rep3

115,564,860

115,357,460 (99.82%)

33.95

89,294,118

77.41

  1. Note: primary stems (PS), transitional stems (TS), and secondary stems (SS)