Table 1 Description of the SNPs significantly associated to sex allocation in the NVGRP. Table shows the SNP ID, the location (chromosome and position), the reference and alternative nucleotide, the minor allele frequency (MAF), the gene (NCBI Nasonia vitripennis Annotation Release 102 Gene ID, the description) for which SNPEff predicted an effect its variant definition according to the Sequence Ontology terminology and the -log10(P) value of the single marker regression for that SNP
From: Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis
SNP ID | Chrom. | Position | Ref | Alt | MAF | Gene ID | Description | Sequence Ontology variant definition | -log10(P) |
|---|---|---|---|---|---|---|---|---|---|
NC_015867.2_30,565,627 | 1 | 30,565,627 | A | C | 0.367 | LOC100124026 | baculoviral IAP repeat-containing protein 5 | upstream gene variant | 5.95 |
NC_015867.2_30,570,243 | 1 | 30,570,243 | T | C | 0.383 | LOC100124028 | cilia- and flagella-associated protein 52 | splice region variant & synonymous variant | 5.95 |
NC_015867.2_30,593,991 | 1 | 30,593,991 | T | C | 0.411 | LOC100124029 | A-agglutinin anchorage subunit | downstream gene variant | 6.87 |
NC_015867.2_30,596,018 | 1 | 30,596,018 | A | G | 0.426 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 7.67 |
NC_015867.2_30,598,225 | 1 | 30,598,225 | T | C | 0.427 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 7.67 |
NC_015867.2_30,602,783 | 1 | 30,602,783 | G | A | 0.441 | LOC100124030 | ADP-ribosylation factor-like protein 4C | upstream gene variant | 7.03 |
NC_015867.2_30,602,789 | 1 | 30,602,789 | A | T | 0.426 | LOC100124030 | ADP-ribosylation factor-like protein 4C | upstream gene variant | 7.03 |
NC_015867.2_30,604,770 | 1 | 30,604,770 | A | T | 0.426 | LOC100124030 | ADP-ribosylation factor-like protein 4C | 5 prime UTR variant | 6.30 |
NC_015867.2_30,606,952 | 1 | 30,606,952 | A | G | 0.411 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 6.30 |
NC_015867.2_30,607,468 | 1 | 30,607,468 | C | G | 0.413 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 6.30 |
NC_015867.2_30,608,905 | 1 | 30,608,905 | C | T | 0.396 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 6.87 |
NC_015867.2_30,608,907 | 1 | 30,608,907 | T | C | 0.397 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 6.87 |
NC_015867.2_30,610,368 | 1 | 30,610,368 | A | G | 0.425 | LOC100124030 | ADP-ribosylation factor-like protein 4C | intron variant | 5.93 |
NC_015867.2_30,612,505 | 1 | 30,612,505 | G | A | 0.426 | LOC100124031 | diphthamide biosynthesis protein 1 | upstream gene variant | 6.30 |
NC_015867.2_30,643,961 | 1 | 30,643,961 | C | T | 0.412 | LOC100115144 | 60S ribosomal protein L21 | upstream gene variant | 6.30 |
NC_015867.2_30,670,045 | 1 | 30,670,045 | C | A | 0.427 | LOC100115175 | meteorin-like protein | intron variant | 6.30 |
NC_015867.2_30,682,477 | 1 | 30,682,477 | T | G | 0.412 | LOC100124052 | hydroxyacid oxidase 1-like | upstream gene variant | 6.30 |
NC_015867.2_31,141,049 | 1 | 31,141,049 | A | G | 0.469 | LOC100187597 | KN motif and ankyrin repeat domain-containing protein 2-like | upstream gene variant | 5.96 |