Skip to main content

Table 2 Precise annotations of the Dermacentor silvarum mt genome

From: Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

Gene

Strand

Start

End

Length

tRNA-Met

(+)

1

67

67

ND2

(+)

68

1028

961

tRNA-Trp

(+)

1029

1091

63

tRNA-TyrAS

(+)

1092

1149

58

COI

(+)

1150

2686

1537

COII

(+)

2687

3359

673

tRNA-Lys

(+)

3360

3429

70

tRNA-Asp

(+)

3430

3491

62

ATP8/6

(+)

3492

4326

835

COIII

(+)

4327

5104

778

tRNA-Gly

(+)

5105

5171

67

ND3

(+)

5172

5511

340

tRNA-Ala

(+)

5512

5576

65

Intergenic

(+)

5577

5578

2

tRNA-Arg

(+)

5579

5640

62

tRNA-Asn

(+)

5641

5708

68

Intergenic

(+)

5709

5712

4

tRNA-Ser

(+)

5713

5769

57

tRNA-Glu

(+)

5770

5834

65

R2

*

5825

5987

163

HAS1

(+)

5835

9258

3424

tRNA-Ile

(+)

9259

9322

64

HAS2

(+)

9323

12,930

3608

tRNA-Thr

(+)

12,931

12,991

61

tRNA-ProAS/ND6

(+)

12,992

13,503

512

Cytb

(+)

13,504

14,585

1082

tRNA-Ser

(+)

14,586

14,652

67

tRNA-LeuAS/CR2

(+)

14,653

15,023

371

CR2

*

14,717

15,023

307

tRNA-Cys

(+)

15,024

15,086

63

Intergenic

(+)

15,087

15,094

8

tRNA-Tyr

(−)

1090

1151

62

LAS1

(−)

1152

5984

4833

ND1

(−)

5985

6903

919

tRNA-Leu

(−)

6904

6964

61

16S rRNA

(−)

6965

8185

1221

tRNA-Val

(−)

8186

8247

62

12S rRNA

(−)

8248

8949

702

CR1

(−)

8950

9258

309

tRNA-IleAS

(−)

9259

9323

65

tRNA-Gln

(−)

9324

9390

67

R1

(−)

9391

9559

169

tRNA-Phe

(−)

9560

9620

61

ND5

(−)

9621

11,275

1655

tRNA-His

(−)

11,276

11,341

66

ND4/4 L

(−)

11,342

12,928

1587

tRNA-ThrAS

(−)

12,929

12,991

63

tRNA-Pro

(−)

12,992

13,055

64

LAS2

(−)

13,056

14,654

1599

tRNA-Leu

(−)

14,655

14,716

62

LAS3

(−)

14,717

1089

1467

  1. This reference sequence is available at the NCBI GenBank database under the accession number MN347015. J(+) and N(−) represent the major and minor coding strands of the mt genome, respectively. Control Region 1 (CR1) and tandem Repeat 1 (R1) were annotated as full-length RNAs cleaved from the minor coding strand (N-strand) primary transcript, whereas CR2 and R2 were annotated as DNA regions (*). The “AS” suffix represents antisense. H-strand Antisense Segment 1 (HAS 1) represents R2/ND1AS/tRNALeuAS/(16S rRNA)AS/tRNAValAS/(12S rRNA)AS/CR1. HAS2 represents tRNAGlnAS/R1/tRNAPheAS/ND5AS/tRNAHisAS/(ND4/4 L)AS. L-strand Antisense Segment 1 (LAS1) represents COIAS/COIIAS/tRNALysAS/tRNA-AspAS/(ATP8/6)AS/COIIIAS/tRNAGlyAS/ND3AS/tRNAAlaAS/tRNAArgAS/tRNAAsnAS/tRNASerAS/tRNAGluAS/R2. LAS2 represents ND6AS/CytbAS/tRNASerAS. LAS3 represents CR2/tRNACysAS/tRNAMetAS/ND2AS/tRNATrpAS