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Table 1 Raw sequencing data statistics summary

From: A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

Sample Read orientation Mean read quality (Phred score) Number of reads % GC % Q > 30 Number of bases (1e6) Mean read length (bp)
001 R1 39.31 399036358 41.07 95.56 59855.45 150.0
R2 36.76 399036358 41.21 86.17 59855.45 150.1
002 R1 39.28 375900168 41.06 95.47 56385.03 150.2
R2 36.8 375900168 41.22 86.32 56385.03 150.3
003 R1 39.32 385826012 40.95 95.59 57873.9 150.4
R2 36.49 385826012 41.08 85.15 57873.9 150.5
  1. The table describes the raw sequencing data quality metrics for all sequenced samples; GC Guanine-cytosine sequence content