A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

BMC Genomics

Table 1 Raw sequencing data statistics summary

Sample	Read orientation	Mean read quality (Phred score)	Number of reads	% GC	% Q > 30	Number of bases (1e6)	Mean read length (bp)
001	R1	39.31	399036358	41.07	95.56	59855.45	150.0
001	R2	36.76	399036358	41.21	86.17	59855.45	150.1
002	R1	39.28	375900168	41.06	95.47	56385.03	150.2
002	R2	36.8	375900168	41.22	86.32	56385.03	150.3
003	R1	39.32	385826012	40.95	95.59	57873.9	150.4
003	R2	36.49	385826012	41.08	85.15	57873.9	150.5

The table describes the raw sequencing data quality metrics for all sequenced samples; GC Guanine-cytosine sequence content

ISSN: 1471-2164