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Table 3 Quality metrics of genotyping comparison between BeadChip and WGS call sets

From: A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

Sample Genotype concordance Non-reference genotype concordance Non-reference genotype sensitivity Sensitivity Precision Specificity Accuracy
001 0.99783 0.99616 0.99687 0.99783 0.99783 0.99925 0.99928
002 0.99156 0.97973 0.98773 0.99156 0.99156 0.99696 0.99718
003 0.99253 0.985 0.98402 0.99253 0.99253 0.99742 0.9975