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Table 3 Quality metrics of genotyping comparison between BeadChip and WGS call sets

From: A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing

Sample

Genotype concordance

Non-reference genotype concordance

Non-reference genotype sensitivity

Sensitivity

Precision

Specificity

Accuracy

001

0.99783

0.99616

0.99687

0.99783

0.99783

0.99925

0.99928

002

0.99156

0.97973

0.98773

0.99156

0.99156

0.99696

0.99718

003

0.99253

0.985

0.98402

0.99253

0.99253

0.99742

0.9975