Table 4 The chosen regions for validation by Sanger sequencing for sample_002
From: A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing
| Chromosome | Start | End | INDELs | SNVs | Total | Genotypes | Vartype | |
|---|---|---|---|---|---|---|---|---|
| BeadChip | WGS | |||||||
| 1 | 109711850 | 109712150 | 0 | 3 | 3 | TG | GG | 3 SNVs |
| TC | TT | |||||||
| CG | GG | |||||||
| 1 | 109759300 | 109759400 | 1 | 0 | 1 | DD | II | 1 INDEL |
| 2 | 85663600 | 85663700 | 1 | 0 | 1 | DI | II | 1 INDEL |
| 2 | 233671750 | 233671850 | 1 | 0 | 1 | II | DI | 1 INDEL |
| 6 | 160246180 | 160246690 | 0 | 3 | 3 | GG | AA | 3 SNVs |
| TT | CC | |||||||
| GG | AA | |||||||
| 10 | 101010500 | 101010600 | 1 | 0 | 1 | DD | II | 1 INDEL |
| 13 | 49792500 | 49792600 | 1 | 0 | 1 | DD | DI | 1 INDEL |
| 22 | 37973800 | 37974170 | 1 | 0 | 1 | DD | II | 1 INDEL |