Table 6 Sanger validation results for sample_002
From: A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing
rsID | Chromosome | Position (GRCh38) | BeadChip genotype | WGS genotype | Sanger genotype |
|---|---|---|---|---|---|
rs12731384d | 1 | 109711898 | TG | GG | TT |
rs1633365c | 1 | 109711919 | TC | TT | TC |
rs58877308a | 1 | 109712113 | CG | GG | GG |
rs138687644 | 1 | 109759369 | GG | GG | G– |
rs202018423b | 1 | 109759339 | CC | CC | CC |
rs757293027 | 1 | 109759384 | CC | CC | C– |
rs760279355b | 1 | 109759346 | CC | CC | CC |
rs767809812 | 1 | 109759359 | DD | II | I– |
rs79394341 | 1 | 109759361 | GG | GG | G– |
rs786205634a | 2 | 85663647 | DI | II | II |
rs3832043d | 2 | 233671807 | II | DI | DD |
rs144484152a | 6 | 160246683 | GG | AA | AA |
rs149262397b | 6 | 160246574 | CC | CC | CC |
rs316022a | 6 | 160246568 | GG | AA | AA |
rs529525717b | 6 | 160246473 | GG | GG | GG |
rs537568133a | 6 | 160246590 | TT | CC | CC |
rs549969754b | 6 | 160246607 | CC | CC | CC |
rs555024471 | 6 | 160246297 | GG | GG | G– |
rs563560445b | 6 | 160246467 | CC | CC | CC |
rs563829592 | 6 | 160246443 | GG | GG | G– |
rs577352795 | 6 | 160246460 | TT | TT | T– |
rs757852385b | 6 | 160246688 | AA | AA | AA |
rs759566284 | 6 | 160246458 | GG | GG | G– |
rs200896335 | 10 | 101010536 | DD | II | NA |
rs753420953 | 13 | 49792587 | DD | DI | NA |
rs397515367a | 22 | 37973817 | DD | II | II |